Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10f01
(646 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 141 2e-33
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 141 2e-33
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 141 2e-33
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 141 2e-33
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 141 2e-33
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 141 2e-33
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 141 2e-33
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 141 2e-33
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 141 2e-33
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 140 5e-33
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 138 2e-32
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 138 2e-32
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 138 2e-32
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 138 2e-32
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 138 2e-32
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 138 2e-32
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 138 2e-32
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 138 2e-32
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 138 2e-32
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 138 2e-32
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 138 2e-32
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 136 5e-32
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 131 2e-30
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 131 2e-30
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 105 1e-22
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 95 1e-19
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 95 1e-19
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 48 4e-05
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 48 4e-05
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 48 4e-05
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 48 4e-05
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 48 4e-05
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 44 5e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 5e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 44 5e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 44 5e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 44 5e-04
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 40 0.006
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 40 0.006
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 40 0.006
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 40 0.006
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 40 0.006
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 39 0.017
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.017
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 39 0.017
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 36 0.12
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 36 0.12
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 36 0.12
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 36 0.12
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 36 0.12
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 36 0.12
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 36 0.12
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 34 0.50
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 34 0.50
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 34 0.50
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 34 0.50
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 34 0.50
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 34 0.50
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 34 0.50
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 0.66
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 31 3.5
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 31 3.5
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 3.5
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 31 3.5
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 3.5
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 3.5
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 3.5
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 3.5
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 3.5
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 31 3.5
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 141 bits (342), Expect = 2e-33
Identities = 77/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 140 bits (338), Expect = 5e-33
Identities = 76/152 (50%), Positives = 89/152 (58%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 138 bits (334), Expect = 2e-32
Identities = 75/152 (49%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 138 bits (333), Expect = 2e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI 350
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 138 bits (333), Expect = 2e-32
Identities = 63/82 (76%), Positives = 73/82 (89%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI 350
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 136 bits (330), Expect = 5e-32
Identities = 75/152 (49%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 285 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 452
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 453 XXXXXXXXXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 131 bits (316), Expect = 2e-30
Identities = 73/145 (50%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 306 GFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 473
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGL 120
Query: 474 XXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 AGPVRGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 131 bits (316), Expect = 2e-30
Identities = 73/145 (50%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+REEKR L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 306 GFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 473
G VLLRGEN+VS+T+
Sbjct: 61 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGL 120
Query: 474 XXXXRGVGGPSQQHMAPGNRGQLSA 548
RGVGGPSQQ M P RG ++A
Sbjct: 121 AGPVRGVGGPSQQVMTPQGRGTVAA 145
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 105 bits (252), Expect = 1e-22
Identities = 60/130 (46%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Frame = +3
Query: 171 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLLRGENIVSLTI 350
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +REEKR LG VLLRGEN+VS+T+
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Query: 351 ----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVGGPSQQHM 518
RGVGGPSQQ M
Sbjct: 61 EGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVRGVGGPSQQVM 120
Query: 519 APGNRGQLSA 548
P RG ++A
Sbjct: 121 TPQGRGTVAA 130
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 95.5 bits (227), Expect = 1e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 285 REEKRTLG 308
REEKR G
Sbjct: 101 REEKRVSG 108
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 95.5 bits (227), Expect = 1e-19
Identities = 43/68 (63%), Positives = 54/68 (79%)
Frame = +3
Query: 105 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 284
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 285 REEKRTLG 308
REEKR G
Sbjct: 101 REEKRVSG 108
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 47.6 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 147
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 148 GLAMVPGHHIVSIEV 162
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 47.6 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 47.6 bits (108), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E R L
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAG--EPRVL 99
Query: 306 GFVLLRGENIVSLTI 350
G ++ G +IVS+ +
Sbjct: 100 GLAMVPGHHIVSIEV 114
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 44.0 bits (99), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.0 bits (99), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.0 bits (99), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 44.0 bits (99), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 44.0 bits (99), Expect = 5e-04
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
++ +IN V VI D R +GT K FD+ +NLIL + E R S E+ LG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE-RVFSSSQG-----VEQVVLG 58
Query: 309 FVLLRGENI 335
++RG+N+
Sbjct: 59 LYIVRGDNV 67
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE---FRKIKSKNSKTADREEKRTLGF 311
++ R+ V +++ R G A+D+H+N+ILGD EE +I + + + KR +
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPM 84
Query: 312 VLLRGENIV 338
+ +RG+ +V
Sbjct: 85 LFVRGDGVV 93
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.017
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 309 FVLLRGENIV 338
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.017
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 309 FVLLRGENIV 338
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 38.7 bits (86), Expect = 0.017
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+ ++I+ +RV Q R G K FD +NL+L E+ + K E+ R LG
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT--EDTRQLG 72
Query: 309 FVLLRGENIV 338
V+ RG ++V
Sbjct: 73 LVVCRGTSVV 82
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 64
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 65 RIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 35.9 bits (79), Expect = 0.12
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +3
Query: 129 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 308
+Q +V + Q + G FD++MNL+L D EE +SKT R++ LG
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEI------HSKTKSRKQ---LG 75
Query: 309 FVLLRGENIVSL 344
++L+G+NI L
Sbjct: 76 RIMLKGDNITLL 87
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.50
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.50
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 321 RGENIVSL 344
G NI L
Sbjct: 75 NGNNITML 82
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.50
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.50
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.50
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 321 RGENIVSL 344
G NI L
Sbjct: 75 NGNNITML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 33.9 bits (74), Expect = 0.50
Identities = 19/68 (27%), Positives = 31/68 (45%)
Frame = +3
Query: 141 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLGFVLL 320
I R+ ++++ + +GT FD +N++L D EF T + L +LL
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-------EITPEGRRITKLDQILL 74
Query: 321 RGENIVSL 344
G NI L
Sbjct: 75 NGNNITML 82
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 33.9 bits (74), Expect = 0.50
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 144 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADR----EEKRTLGF 311
N +V + ++++ +G KAFD+H N++L + +E K+ K + + R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
Query: 312 VLLRGENIV 338
+ LRG++++
Sbjct: 99 MFLRGDSVI 107
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 0.66
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 524 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 628
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 120 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 239
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/73 (23%), Positives = 37/73 (50%)
Frame = +3
Query: 126 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTL 305
++++ ++ ++ + L R G + FD MNL++ +C E A ++ +
Sbjct: 8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEM----------ATSGQQNNI 57
Query: 306 GFVLLRGENIVSL 344
G V++RG +I+ L
Sbjct: 58 GMVVIRGNSIIML 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,597,893
Number of Sequences: 237096
Number of extensions: 1234629
Number of successful extensions: 2881
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 2787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2874
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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