Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e19
(556 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10700.1 68418.m01239 expressed protein 133 7e-32
At5g45275.1 68418.m05557 expressed protein Requires functional a... 31 0.68
At4g19450.1 68417.m02861 nodulin-related weak similarity to nodu... 30 0.90
At1g31470.1 68414.m03853 nodulin-related weak similarity to nodu... 30 0.90
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 30 1.2
At1g08760.1 68414.m00975 expressed protein similar to At1g21030,... 29 2.1
At2g19780.1 68415.m02311 leucine-rich repeat family protein / ex... 29 2.8
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.8
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 28 4.8
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 27 6.4
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 27 6.4
At3g19610.1 68416.m02486 hypothetical protein 27 8.4
At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-... 27 8.4
>At5g10700.1 68418.m01239 expressed protein
Length = 200
Score = 133 bits (322), Expect = 7e-32
Identities = 65/132 (49%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Frame = +2
Query: 167 KMSNVTVQYILLRSDLLKEFGWSIGALVAQACHASSAVMHIYKDDEHTIQYLND--LDNM 340
K +V VQY++LR DL+ W +G++V Q CHAS A + +KDD T+QY + +D+M
Sbjct: 66 KPDDVVVQYVVLRRDLIDS--WPLGSVVTQGCHASVAAIWSFKDDPVTLQYCDPQHIDSM 123
Query: 341 HKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGKFKL 520
HKV LEV E + ++EKLK I HKLW+EQPENIPTC+A KPYPK +V + K KL
Sbjct: 124 HKVTLEVKGETQMMNLSEKLKLGGISHKLWMEQPENIPTCIATKPYPKSQVSSFFKKLKL 183
Query: 521 YKGHIIKNPVNF 556
K I K F
Sbjct: 184 CKNTIHKASQRF 195
>At5g45275.1 68418.m05557 expressed protein Requires functional
assignment.
Length = 570
Score = 30.7 bits (66), Expect = 0.68
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 116 DFIVHISTLQKAILA*NKMSNVTVQYILLRSDLLKEFGWSIG 241
DF + S L K++L +S V + Y+ + SDL K FGWS G
Sbjct: 26 DFSTYSSNL-KSVLG---ISQVQLNYLAVASDLGKVFGWSSG 63
>At4g19450.1 68417.m02861 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 572
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 116 DFIVHISTLQKAILA*NKMSNVTVQYILLRSDLLKEFGWSIG 241
DF + S L K++L +S V + Y+ + SDL K FGWS G
Sbjct: 26 DFSAYSSDL-KSVLG---ISQVQLNYLAVASDLGKVFGWSSG 63
>At1g31470.1 68414.m03853 nodulin-related weak similarity to
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 546
Score = 30.3 bits (65), Expect = 0.90
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 116 DFIVHISTLQKAILA*NKMSNVTVQYILLRSDLLKEFGWSIG 241
DF + S L K++L +S V + Y+ + SDL K FGWS G
Sbjct: 26 DFSAYSSHL-KSVLG---ISQVRLNYLAVASDLGKAFGWSSG 63
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -2
Query: 444 SGCSIHNLCNIEFSF----NFSATFLSD-SSFGTSKTTLCILSKSFKYCIVCSS 298
SGCS +NLC+ F + S ++SD SF T T+ ++ S + CS+
Sbjct: 157 SGCSPNNLCSYSFKYGDGSGTSGYYISDFMSFDTVITSTLAINSSAPFVFGCSN 210
>At1g08760.1 68414.m00975 expressed protein similar to At1g21030,
At5g44890, At2g29240, At1g08740; similar to EST
gb|N96641
Length = 748
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 317 YLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYP 481
YL D+ H + +P+E +++K++ +H +E +P ++P P
Sbjct: 52 YLKVSDSSHATYVSLPDEHDDLILSDKIQLGQYIHVDRVESSSPVPILRGVRPVP 106
>At2g19780.1 68415.m02311 leucine-rich repeat family protein /
extensin family protein contains leucine rich-repeat
(LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar
to leucine-rich repeat/extensin 1 (GI:13809918)
[Arabidopsis thaliana]; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 402
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 438 CSIHNLCNIEFSFNFSATF---LSDSSFGTSKTTLCILSKSFK 319
C++ NL N+ SFNF + F S S G T CI K ++
Sbjct: 321 CTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQ 363
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/49 (34%), Positives = 30/49 (61%)
Frame = +2
Query: 371 ESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYPKDEVKKYVGKFK 517
E ++ E +K NS ++ +++P N+PT + P P+ E+K +VGK K
Sbjct: 690 EEVKSEREHIK-NSYA-EVEMKEPVNLPTTI---PIPQPELKAFVGKEK 733
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 438 CSIHNLCNIEFSFNFSATFLSDSS 367
CS+ NL N+ +FNF + F S+ S
Sbjct: 326 CSLRNLINLTVAFNFFSGFSSECS 349
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 428 WIEQPENIPTCLAIKPYPKDEVKKYVGKFKLYKG 529
W+E+ + PTC A+ P++ G+ +L++G
Sbjct: 319 WLERQQTCPTCRALVVPPENATSAAPGQRELHQG 352
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 300 SSLYMCITAEEAWHA*ATRAPIDQPNSFNKSLRSNIY 190
+S Y+C+T + +H AP++ + F SL +Y
Sbjct: 137 TSYYVCVTCGDQFHKECVGAPLEFKHPFYPSLSLQLY 173
>At3g19610.1 68416.m02486 hypothetical protein
Length = 612
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +2
Query: 317 YLNDLDNMHKVVLEVPNEESLRKVAEKLKENSILHKLWIEQPENIPTCLAIKPYP 481
+L D+ H + + +P EE+ + +KL+ ++ +E +P I+P P
Sbjct: 53 FLRITDSTHSIYVSLPREENDLVLYDKLQIGQLIFVEKLEFAYPVPMIKGIRPTP 107
>At1g03680.1 68414.m00347 thioredoxin M-type 1, chloroplast (TRX-M1)
nearly identical to SP|O48737 Thioredoxin M-type 1,
chloroplast precursor (TRX-M1) {Arabidopsis thaliana};
similar to ESTs gb|T13714, gb|H76398, gb|N37762,
gb|AA042639, gb|T21104, emb|Z30901
Length = 179
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 458 CLAIKPYPKDEVKKYVGKFKLYKGHIIKNP 547
C I P + +KY G+FK YK + ++P
Sbjct: 107 CKMIDPIVNELAQKYAGQFKFYKLNTDESP 136
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,938,362
Number of Sequences: 28952
Number of extensions: 212971
Number of successful extensions: 564
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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