Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e17
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569 42 4e-04
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 41 6e-04
08_01_0629 + 5464282-5464304,5464367-5465528 30 1.5
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407... 30 1.5
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 28 6.2
08_01_0948 - 9405356-9406042,9406214-9406303,9406533-9406644,940... 28 6.2
03_01_0581 + 4310136-4310186,4310940-4311144,4311245-4311410,431... 28 6.2
07_03_1560 - 27730241-27730336,27730471-27730644,27730746-277309... 27 8.2
>02_01_0547 + 4032161-4032418,4032747-4032953,4033216-4033569
Length = 272
Score = 41.9 bits (94), Expect = 4e-04
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 159 LQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKM----MWEQ 326
L +RLVT D T TL+ +K YY A++ G +M E FK M +
Sbjct: 4 LSKLRLVTVDVTGTLIAYKGQLGDYYCMAAKS---AGMPCPDYKRMHEGFKAAYTEMTVR 60
Query: 327 HPNFGRNSILWE-EWWRQVVK 386
HP FG S + +WW+ VK
Sbjct: 61 HPCFGHASNMPNIDWWKMCVK 81
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 41.1 bits (92), Expect = 6e-04
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 168 IRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKM----MWEQHPN 335
+RL+T D T TLL +K YY A+ G +M E FK+ M Q+P
Sbjct: 51 LRLITVDVTGTLLAYKGQLGDYYCMAAKA---AGKPCPDYQRMHEGFKLAYTEMARQYPC 107
Query: 336 FGRNSILWE-EWWRQVVK 386
FG + + +WWR VK
Sbjct: 108 FGFAAKMPNIDWWRMCVK 125
>08_01_0629 + 5464282-5464304,5464367-5465528
Length = 394
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 195 NTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQ 326
NTLL+ K P TK Y G + D+Q ++ WE+
Sbjct: 192 NTLLEIKQHPQANQTKGKHVINYWGFKKDSQQRLNNGCTTDWEK 235
>08_01_0462 +
4072369-4072630,4072732-4072814,4072937-4073020,
4073509-4073584,4073712-4073784,4073878-4073951,
4074158-4074251,4074374-4074443
Length = 271
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 186 DATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEE 365
DA TLL+ +Q Y + R YG SE + + F W + + +
Sbjct: 64 DAGGTLLQLARPVAQTYASLGRRYGMSKSEESIKEGFKRAFSAPWPKTLRYQGDG---RP 120
Query: 366 WWRQVV 383
+WR VV
Sbjct: 121 FWRIVV 126
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 487 AATSQHLEVLKSLIKVFPKLLVS 419
AA HLEVLK L++ FP L ++
Sbjct: 127 AAKQGHLEVLKELLQAFPALAMT 149
>08_01_0948 -
9405356-9406042,9406214-9406303,9406533-9406644,
9407065-9407162,9407494-9407697,9407796-9408285,
9409711-9409715
Length = 561
Score = 27.9 bits (59), Expect = 6.2
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Frame = +3
Query: 273 ESDAQNKMRENFKMMWEQH--PNFGRNSILWEEW--------WRQVVKLTLQDHLPVGAD 422
++D + F+MM +H F +S W W WR+ + Q VG
Sbjct: 441 QADDIKCVASTFRMMHSKHLQHTFRLHSYQWRTWAARFIQSAWRR--RQNRQKMAEVGLS 498
Query: 423 TRSLGN-TLINDFKTSKCWDVAAGSDTL 503
R +L+NDF ++C D+ S T+
Sbjct: 499 NRWKSFFSLVNDFNDTRCEDINGSSSTV 526
>03_01_0581 +
4310136-4310186,4310940-4311144,4311245-4311410,
4312035-4312257,4312891-4312967,4313091-4313278,
4313363-4313457,4313674-4313807,4313914-4314024,
4314304-4314619,4314919-4315040,4315183-4315293,
4315824-4316012,4316105-4316263,4316449-4316530,
4317080-4317190
Length = 779
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 306 FKMMWEQHPNFGRNSILWEEWWRQVVKLTLQD 401
+K+ +QH N GR L EE R +K +L D
Sbjct: 578 WKLDSDQHYNIGRQGTLTEETGRSFIKRSLSD 609
>07_03_1560 -
27730241-27730336,27730471-27730644,27730746-27730907,
27730993-27731101,27732268-27732374,27732875-27733141
Length = 304
Score = 27.5 bits (58), Expect = 8.2
Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 5/142 (3%)
Frame = +3
Query: 171 RLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNS 350
+ + DA TLL +Q Y I YG SE + + R + W GR+
Sbjct: 70 KAILVDAAGTLLAPTEPMAQVYRTIGEKYGVNYSEDEILMRYRRAYAQPW------GRSR 123
Query: 351 ILWEE----WWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVA-AGSDTLLQXX 515
+ + + +W+ +V + G L + T+K W + + + +
Sbjct: 124 LRYVDDGRPFWQHIVSSS------TGCSDLQYFEELYQYYTTAKAWQLCDPDAKYVFEAL 177
Query: 516 XXXXXXXXXXSNSDPRLYDILQ 581
SN D RL +LQ
Sbjct: 178 RKAGVKTAVVSNFDTRLRPLLQ 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,389,143
Number of Sequences: 37544
Number of extensions: 279722
Number of successful extensions: 618
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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