Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e17
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28682| Best HMM Match : Hydrolase (HMM E-Value=1.2e-19)             68   5e-12
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)                      33   0.22 
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)                       31   0.52 
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_10954| Best HMM Match : Activin_recp (HMM E-Value=0.12)             29   3.7  
SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)              29   3.7  
SB_45911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_5938| Best HMM Match : Activin_recp (HMM E-Value=0.28)              29   3.7  
SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)               29   3.7  
SB_36035| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   27   8.5  
SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)                     27   8.5  
SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)               27   8.5  

>SB_28682| Best HMM Match : Hydrolase (HMM E-Value=1.2e-19)
          Length = 219

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
 Frame = +3

Query: 171 RLVTFDATNTLLKFK-MVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFG-R 344
           RL+T DATNTL + +  V  QY        GY+ S ++   + R+ +KM W ++PNFG  
Sbjct: 3   RLITLDATNTLFRVRGSVGYQYAKSAMEQLGYQLSAANIDKEFRKAYKMYWIKYPNFGAA 62

Query: 345 NSILWEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQXXXXX 524
           + I  ++WW +VV+ T   ++    +  +    L N F T   W+V      +L      
Sbjct: 63  HRITSKQWWGKVVRKTFDGNIH-SEEIEAFSVHLYNHFATGDPWEVFPEVMHVLTQLKGE 121

Query: 525 XXXXXXXSNSDPRLYDIL 578
                  SN D RL  IL
Sbjct: 122 EVTLGVISNFDERLEQIL 139


>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
          Length = 296

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 363 EWWRQVVKLTLQ--DHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 509
           EWWR +  L+ +      V  D +SL    +ND+  + CWD A    TL++
Sbjct: 76  EWWRHIDNLSQRRRSSAKVSLDEQSLVE--LNDYFANLCWDTAYEQPTLVE 124


>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 363 EWWRQVVKLTLQ--DHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 509
           EWWR +  L+ +      V  D +SL    +ND+  + CWD A    TL++
Sbjct: 110 EWWRHIDNLSQRRRSSAKVSLDEQSLVE--LNDYFANLCWDTAYEQPTLVE 158


>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
          Length = 270

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 363 EWWRQVVKLTLQ--DHLPVGADTRSLGNTLINDFKTSKCWDVAAGSDTLLQ 509
           +WWR +  L+ +      V  D +SL    +ND+  + CWD A    TL++
Sbjct: 50  DWWRHIDNLSQRRRSSAKVSLDEQSLVE--LNDYFANLCWDTAYEQPTLVE 98


>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -2

Query: 371 PPFFPEDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCV 234
           PPF P  R+PS+ R   P +    P   LS       + C+CNLCV
Sbjct: 260 PPFSPY-RLPSRARCSPPGYPSEEPRWRLSAV----TSFCSCNLCV 300


>SB_10954| Best HMM Match : Activin_recp (HMM E-Value=0.12)
          Length = 167

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 94  QQHPNLDKESIAYKTWWAE 112


>SB_57924| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 250 QQHPNLDKESIAYKTWWAE 268


>SB_45911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 89  QQHPNLDKESIAYKTWWAE 107


>SB_5938| Best HMM Match : Activin_recp (HMM E-Value=0.28)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 89  QQHPNLDKESIAYKTWWAE 107


>SB_3171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 851

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 737 QQHPNLDKESIAYKTWWAE 755


>SB_2279| Best HMM Match : PG_binding_1 (HMM E-Value=3.5)
          Length = 351

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 20  QQHPNLDKESIAYKTWWAE 38


>SB_36035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 321 EQHPNFGRNSILWEEWWRQ 377
           +QHPN  + SI ++ WW +
Sbjct: 141 QQHPNLDKESIAFKTWWAE 159


>SB_7382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 356  EDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCVILRGY 219
            +DR   + +   PHH     H++  I  A   T+C   L  +L+GY
Sbjct: 1040 DDRQKGRTKYTGPHHVLTVDHVLGMIADAEKCTVCGTQL--LLQGY 1083


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 174 LVTFDAT-NTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNS 350
           L+T  +T N L + KM P    T + +T+     E +  NKMRE F+   +QH ++ + +
Sbjct: 275 LLTLPSTPNVLKRPKMKPK---THVEKTH--EEQELEEINKMREMFRAKMKQHDDYRKKA 329


>SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)
          Length = 1104

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 356  EDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCVILRGY 219
            +DR   + +   PHH     H+++ IT A    +  C   ++L+GY
Sbjct: 1023 DDRQKGRTKYTGPHHVLTVDHVLVMITDAEKKCM-VCGTQLLLQGY 1067


>SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 356 EDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCVILRGY 219
           +DR   + +   PHH     H+++ IT A    +  C   ++L+GY
Sbjct: 518 DDRQKGRTKYTGPHHVLTVDHVLVMITDAEKKCM-VCGTQLLLQGY 562


>SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)
          Length = 947

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 356 EDRIPSKIRMLFPHHFKVFPHLILSITFASPVTICTCNLCVILRGY 219
           +DR   + +   PHH     H++  I  A   T+C   L  +L+GY
Sbjct: 867 DDRQKGRTKYTGPHHVLTVDHVLGMIADAEKCTLCGTQL--LLQGY 910


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,885,989
Number of Sequences: 59808
Number of extensions: 327302
Number of successful extensions: 671
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)