Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e17
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 217 WYPRNITQRLHVHMVTGEAKVMLKIR*GKT 306
           W  RN+  + HVH       V++ +  G T
Sbjct: 183 WMRRNVLNKQHVHFHDYTGSVVIHVVGGLT 212


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 508 CSNVSLPAATSQHLEVLKSLIKVFPKLLVSAPTGR*SCKVSLTTCRHHSSQRIEFL 341
           C+  SL A    H  VL +    F KLL+S P    +  +    C +     IEF+
Sbjct: 42  CNEASLKA----HKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,468
Number of Sequences: 438
Number of extensions: 2896
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)