Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e17
(582 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase fa... 29 1.7
At4g20200.1 68417.m02953 terpene synthase/cyclase family protein... 29 2.3
At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase fa... 29 3.0
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ... 29 3.0
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 28 4.0
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 28 5.2
At3g11160.1 68416.m01353 expressed protein 28 5.2
At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containi... 27 6.9
At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly... 27 6.9
At2g24690.1 68415.m02948 transcriptional factor B3 family protei... 27 6.9
At4g33280.1 68417.m04735 transcriptional factor B3 family protei... 27 9.1
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 27 9.1
At1g05640.1 68414.m00585 ankyrin repeat family protein contains ... 27 9.1
>At1g14310.1 68414.m01696 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 254
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/149 (17%), Positives = 52/149 (34%)
Frame = +3
Query: 135 TSNPLEMCLQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKM 314
T P++ G+ L DA TLL+ + Y + + YG + + ++ + + F
Sbjct: 34 TGKPIKRAYDGLLL---DAGGTLLQLSKPVHETYASLGQKYGLKTTPAEIKEGFKRVFSA 90
Query: 315 MWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADTRSLGNTLINDFKTSKCWDVAAGS 494
W + + + +W+ VV G + + + W + G+
Sbjct: 91 PWPEKLRYQGDG---RPFWKLVVSEA------TGCSDNDYFEDVYQYYANGEAWHLPEGA 141
Query: 495 DTLLQXXXXXXXXXXXXSNSDPRLYDILQ 581
+ SN D RL +L+
Sbjct: 142 YETMSLLKDAGVKMAVVSNFDTRLRKLLK 170
>At4g20200.1 68417.m02953 terpene synthase/cyclase family protein
5-epi-aristolochene synthase, Nicotiana tabacum,
PATX:G505588
Length = 604
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 138 SNPLE-MCLQGIRLVTFDATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNK 293
S PL+ + L+ +TFD + KFK +P+ +T + SE DA K
Sbjct: 39 SKPLKHIRLKATNTLTFDDQERIRKFKKLPTSEWTHYGHSISIDVSEMDALRK 91
>At2g41250.1 68415.m05094 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|Q94915 Rhythmically
expressed gene 2 protein (DREG-2) {Drosophila
melanogaster}; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 290
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 186 DATNTLLKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMW 320
DA TLL +Q Y I YG SE++ + R ++ W
Sbjct: 83 DAVGTLLVPAQPTAQIYKNIGEKYGVEYSEAEILTRYRRAYQKPW 127
>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 662
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/37 (48%), Positives = 21/37 (56%)
Frame = -3
Query: 487 AATSQHLEVLKSLIKVFPKLLVSAPTGR*SCKVSLTT 377
AA HLEVLK L++ FP L A T SC +L T
Sbjct: 231 AAKQGHLEVLKILLETFPNL---AMTTDLSCTTALHT 264
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 28.3 bits (60), Expect = 4.0
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 211 SKWYPRNI-TQRLHVHMVTGEAKVMLKIR*GKTLK*CGNSILILEGILSSGKNGGDK 378
++W R T +L H TG KV L +R KTLK C N LI G+ +G +K
Sbjct: 63 NQWKERGAGTVKLLKHKETG--KVRLVMRQSKTLKICANH-LISSGMSVQEHSGNEK 116
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 312 MMWEQHPNFGRNSILWEEWWRQVVKLTLQDHLPVGADT-RSLGNTL 446
+M EQH R +W +W+ T+ + L AD+ R +G+ L
Sbjct: 863 LMQEQHKQKNRRGKMWVKWFDYTTLKTMDEDLAEEADSDRRVGHWL 908
>At3g11160.1 68416.m01353 expressed protein
Length = 145
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 LKFKMVPSQYYTKIARTYGYRGSESDAQNKMRENFKMMWEQHPNFGRNSILWEE-WWRQV 380
L+ KM P + R SESD + KM +WE R+S LWEE W +
Sbjct: 70 LRKKMWPELKDKEWFRITSRMWSESDIRKKMLRMRSDLWES-MGVSRSSDLWEEKMWDYL 128
Query: 381 VK 386
K
Sbjct: 129 TK 130
>At3g48250.1 68416.m05266 pentatricopeptide (PPR) repeat-containing
protein vacontains Pfam profile PF01535: PPR repeat
Length = 621
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 380 HLSPPFFPEDRIPSKIRMLF--PHHFKVFPHL 291
H+ F+ E R+ +LF PHHFK P +
Sbjct: 582 HVIEAFYREGRLTDAKNLLFICPHHFKTHPKI 613
>At2g30060.1 68415.m03656 Ran-binding protein 1b (RanBP1b) nearly
identical to atranbp1b [Arabidopsis thaliana] GI:2058284
Length = 217
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 211 SKWYPRNI-TQRLHVHMVTGEAKVMLKIR*GKTLK*CGNSILILEGILSSGKNGGDK 378
S+W R T + H V+G K+ L +R KTLK C N L+ G+ G DK
Sbjct: 66 SQWKERGAGTVKFLKHRVSG--KIRLVMRQSKTLKICANH-LVGSGMSVQEHAGNDK 119
>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
low similarity to reproductive meristem protein 1
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 682
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 485 GWKRYIAANNKKEGDSY 535
GWK ++ AN K GD+Y
Sbjct: 92 GWKSFVKANGLKTGDTY 108
>At4g33280.1 68417.m04735 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 461
Score = 27.1 bits (57), Expect = 9.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 482 SGWKRYIAANNKKEGD 529
+GWK+++ NN +EGD
Sbjct: 406 TGWKKFVQDNNLREGD 421
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 487 AATSQHLEVLKSLIKVFPKLLV 422
AA HLE++KS++ FP LL+
Sbjct: 132 AAAFGHLELVKSIVSKFPSLLL 153
>At1g05640.1 68414.m00585 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 627
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 487 AATSQHLEVLKSLIKVFPKLLVSAPTGR*SCKVSLTT 377
AA H+E LK L++ FP L ++ SC +L T
Sbjct: 195 AAKQGHIEALKKLLETFPNLAMTVDL---SCTTALHT 228
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,032
Number of Sequences: 28952
Number of extensions: 240264
Number of successful extensions: 559
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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