Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e16
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 53 2e-08
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 42 3e-05
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 38 7e-04
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 36 0.002
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 2.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 3.2
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 3.2
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz... 25 5.6
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.4
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 25 7.4
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 9.8
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 52.8 bits (121), Expect = 2e-08
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +2
Query: 215 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMD 394
GLFINN+ V S G K +P+ ++I EV F +PWR
Sbjct: 24 GLFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFS 83
Query: 395 ASERGALINKLADLIERDRTYL 460
+++RG +++LAD IE++ YL
Sbjct: 84 SAQRGRCLSRLADCIEQNLEYL 105
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 42.3 bits (95), Expect = 3e-05
Identities = 26/77 (33%), Positives = 41/77 (53%)
Frame = +2
Query: 215 GLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMD 394
GL+IN EW KS++ T++T +P+ +VIA+V F W+ +
Sbjct: 22 GLYINGEWHKSAE--TWETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAF---KTWKKVP 76
Query: 395 ASERGALINKLADLIER 445
SE+G L+ KLA+L E+
Sbjct: 77 GSEKGELLMKLAELTEK 93
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 37.9 bits (84), Expect = 7e-04
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +2
Query: 221 FINNEWVKSSDGKTFKTENPANGQVIAEV 307
F+ +W+ S + KTF+ +NPA G++I +V
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKV 49
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 36.3 bits (80), Expect = 0.002
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = +2
Query: 221 FINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMDAS 400
+I +WV ++ GKTF ENP + +A V F +R D
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFL---SYRNSDIK 83
Query: 401 ERGALINKLADLI 439
ER A++ + DLI
Sbjct: 84 ERYAILRRWYDLI 96
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 112 VAERLQIGSGAKSEFCNSCFSGTGSPNKT-GNFIHWSLHKQ*VGEV 246
+A + + + CN+ G NK GN IH+ L K G+V
Sbjct: 1054 LAHEINAADSSSEQICNALRRGFLRLNKKLGNVIHYDLRKSSEGDV 1099
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.8 bits (54), Expect = 3.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 30 IHLNKLVPVTVRDYFVCVLWNI*IY 104
+H N +P+ D FV +LW+ +Y
Sbjct: 969 LHSNITIPILQSDSFVGILWHTIVY 993
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 3.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 185 EPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSYRHKFV 39
+P + L+ ++ + +C R AT +Y Y P + +S+SYR +
Sbjct: 326 KPSTTSKNLKFTIMSYNVLCERYATSTLYGYTPSWA---LSWSYRKDLI 371
>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 318 TKQMWTKL*RQLEMRSNLDHHGEQWTPPRGGPLST 422
T M TKL Q +M+ +D H WTP ST
Sbjct: 24 TSAMDTKL--QTKMKEIIDQHTSTWTPVVSSVTST 56
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 27 KIHLNKLVPVTVRDYFVCVLWN 92
K KL+ +T++D VCV++N
Sbjct: 1018 KFDYQKLISLTLKDSDVCVIYN 1039
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 155 NSLFAPEPICRRSATFLIYLYVPKYTDKIISYSY 54
++LF P+ R A +L VP TDK+ Y
Sbjct: 259 DALFVPQQHSARDAQDTFFLKVPASTDKLPDPEY 292
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 24.2 bits (50), Expect = 9.8
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 67 IILSVYFGTYKYIKNVAERLQIGSGAKSEFCN---SCFSGTGSPNKTGNFIHWSLHKQ*V 237
++L V GTYKY+ N+ L E+ + F PN + +W H+ +
Sbjct: 252 VVLIVEDGTYKYLLNLMRDLGRDFKNSEEYPHLFIHLFMSENIPNLSSIRANWPQHRLFI 311
Query: 238 GEVF*WEDL 264
F +DL
Sbjct: 312 NLHFNQKDL 320
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 111 IFNIFICSKVHRQ--NNLLQLPAQVCLGVFSMLLNS 10
+ N FI S+ Q +N L+LP C+G S LN+
Sbjct: 440 LLNPFIASQHFDQMIHNNLRLPYDSCMGYISNALNA 475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,771
Number of Sequences: 5004
Number of extensions: 33290
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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