Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e16
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140... 61 4e-10
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066... 59 2e-09
06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910... 52 2e-07
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128... 52 2e-07
01_05_0544 + 23098921-23098953,23099209-23099272,23099942-231000... 44 6e-05
05_05_0263 - 23673014-23673697,23673772-23674188 29 1.8
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 9.7
02_02_0500 - 10993675-10994067,10994434-10995738 27 9.7
>01_05_0545 +
23109920-23110040,23113363-23113505,23113626-23114009,
23114106-23114219,23114310-23114483,23114608-23114745,
23114884-23115021,23115094-23115155,23115268-23115541
Length = 515
Score = 61.3 bits (142), Expect = 4e-10
Identities = 32/82 (39%), Positives = 43/82 (52%)
Frame = +2
Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
EI +T LFIN E+V ++ GKTFKT +P G V+A + F G
Sbjct: 23 EIKFTKLFINGEFVDAASGKTFKTRDPRTGDVLAHIAEADKADVDLAVKAAREAFEHGK- 81
Query: 380 WRTMDASERGALINKLADLIER 445
W M ER ++NKLADL+E+
Sbjct: 82 WPRMSGYERSRVMNKLADLVEQ 103
>06_03_0627 +
22903346-22903523,22906010-22906152,22906235-22906618,
22906980-22907069,22907147-22907320,22907414-22907551,
22907719-22907856,22907958-22908019,22908240-22908513
Length = 526
Score = 58.8 bits (136), Expect = 2e-09
Identities = 32/82 (39%), Positives = 42/82 (51%)
Frame = +2
Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
EI YT LFIN +V ++ GKTF+T +P G VIA V F G
Sbjct: 42 EIRYTKLFINGRFVDAASGKTFETRDPRTGDVIARVAEGDKEDVDLAVKAAREAFDHGE- 100
Query: 380 WRTMDASERGALINKLADLIER 445
W M SERG ++ K A+++ER
Sbjct: 101 WPRMSGSERGRVMAKYAEVVER 122
>06_01_1105 +
9102059-9102167,9103770-9103907,9104125-9104267,
9104362-9104515,9104610-9104839,9105382-9105471,
9105606-9105779,9105873-9106010,9106212-9106349,
9106450-9106511,9106744-9106972,9108531-9109364
Length = 812
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/82 (35%), Positives = 42/82 (51%)
Frame = +2
Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
++ YT L I+ ++V S+ GKTF T +P G++IA V F G P
Sbjct: 65 QVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAEGDAEDINRAVHAARKAFDEG-P 123
Query: 380 WRTMDASERGALINKLADLIER 445
W M A ER ++ + ADLIE+
Sbjct: 124 WPKMTAYERSRILLRFADLIEK 145
>02_05_0620 -
30412004-30412429,30412509-30412646,30412729-30412866,
30412966-30413139,30413211-30413684,30413775-30413917,
30414002-30414160,30414943-30415042
Length = 583
Score = 52.0 bits (119), Expect = 2e-07
Identities = 30/82 (36%), Positives = 40/82 (48%)
Frame = +2
Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
++ YT L IN +V ++ GKTF T +P G VIA V F G P
Sbjct: 69 DVKYTKLLINGNFVDAASGKTFATVDPRTGDVIARVAEGDAEDVNRAVAAARRAFDEG-P 127
Query: 380 WRTMDASERGALINKLADLIER 445
W M A ER ++ + ADLIE+
Sbjct: 128 WPRMTAYERCRVLLRFADLIEQ 149
>01_05_0544 +
23098921-23098953,23099209-23099272,23099942-23100084,
23100246-23100719,23100950-23101123,23101230-23101367,
23101489-23101589,23101910-23102183
Length = 466
Score = 44.0 bits (99), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = +2
Query: 254 GKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMDASERGALINKLAD 433
GKTF+T +P G+VIA++ F G PW M RG +++K AD
Sbjct: 33 GKTFETRDPRTGEVIAKIAEGDKADIDLAVKAAREAFDHG-PWPRMSGFARGRILHKFAD 91
Query: 434 LIER 445
L+E+
Sbjct: 92 LVEQ 95
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 368 LGSPWRTMDASERGALINKLADLIERDR 451
+ SPWR +DA G ++ +L L++R R
Sbjct: 1 MDSPWRDLDADVLGFILKRLPCLVDRRR 28
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/41 (24%), Positives = 26/41 (63%)
Frame = -1
Query: 123 TLRNIFNIFICSKVHRQNNLLQLPAQVCLGVFSMLLNSQII 1
++R + N+ I + R NN +++ + C G+ M+L+++++
Sbjct: 427 SVRFVPNLAISRIIRRDNNKVRILQEGCKGLLYMVLHARVV 467
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +1
Query: 274 KPCQWPSYS*GPTCQQSRCGQSCEGS*RCVXTWITMENNGRLREGGP 414
K C P +S P RC +GS + + ++NNG + GP
Sbjct: 337 KSCDVPGFSGVPPTALVRCFHMGKGSNKVGSLQLFVDNNGSCEDMGP 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,569
Number of Sequences: 37544
Number of extensions: 221089
Number of successful extensions: 620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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