Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e16
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 2e-14
SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 49 2e-06
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14) 44 6e-05
SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 8e-04
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 27 5.7
SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 27 5.7
SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1) 27 10.0
SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2) 27 10.0
>SB_25829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 75.4 bits (177), Expect = 2e-14
Identities = 38/81 (46%), Positives = 45/81 (55%)
Frame = +2
Query: 218 LFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMDA 397
LFINNE+V + GK F T NP G+ I ++ F LGS WRTMDA
Sbjct: 332 LFINNEFVDCTSGKVFPTINPTTGEKICDISEGDKEDVDKAVKAAKEAFKLGSAWRTMDA 391
Query: 398 SERGALINKLADLIERDRTYL 460
S RG L+ KLA LI+RD YL
Sbjct: 392 SMRGKLLYKLAQLIDRDIAYL 412
>SB_10421| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1485
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/33 (69%), Positives = 24/33 (72%)
Frame = +2
Query: 362 FXLGSPWRTMDASERGALINKLADLIERDRTYL 460
F LGS WRTMDAS RG + KLADL ERD YL
Sbjct: 1250 FKLGSVWRTMDASARGHFLYKLADLCERDADYL 1282
>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
Length = 266
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +2
Query: 224 INNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPWRTMDASE 403
I ++W ++DG+T + NPA +VIA V F SPW + E
Sbjct: 48 IGDQWCDAADGQTIQVLNPATAEVIARVPRAGQREIDRAVMAARQAFD-DSPWSRIKPVE 106
Query: 404 RGALINKLADLIERDRTYL 460
R L+ ADLIE++ L
Sbjct: 107 RQKLLWNFADLIEKNAALL 125
>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 40.3 bits (90), Expect = 8e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +2
Query: 218 LFINNEWVKSSDGKTFKTENPANGQVIAEV 307
LFIN E+V S GKTF T NP +G V+A+V
Sbjct: 711 LFINGEFVDSHHGKTFNTINPTDGTVLAQV 740
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = -3
Query: 418 DKGPPLGGVHCSPW*SKXERISSCLHSFVHICFVGMLDLSYNLAIGRVFSFEGLPIRRLH 239
D P + V C + I CLHSF C V L SY+ + + P +
Sbjct: 1359 DLNPHIICVLCGGYLVDATTIVECLHSFCRSCIVSWLQASYHCPVCDTEVHKTRPFLNIR 1418
Query: 238 PLIVYEE 218
P V ++
Sbjct: 1419 PDCVLQD 1425
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 139 GAKSEFCNSCFSGTGSPNKTGNFIHWS 219
G + C SC +G+G N+T + WS
Sbjct: 74 GGPNLLCESCSTGSGGVNRTASLDGWS 100
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 358 ISSCLHSFVHICFVGMLDLSYNLAI 284
I CLHSF C V L+ SY +
Sbjct: 61 IIECLHSFCRCCIVRYLETSYRCPV 85
>SB_904| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 510
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 358 ISSCLHSFVHICFVGMLDLSYNLAI 284
I CLHSF C V L+ SY +
Sbjct: 29 IIECLHSFCRCCIVRYLETSYRCPV 53
>SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1)
Length = 378
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -2
Query: 203 FPVLFGEPVPLKQLLQNSLFAPEPICRRSATFLIYLYVPKYTDKIISYSY 54
FP LFG+P+ ++ A + R+ + F ++LY P ++++SY
Sbjct: 214 FPNLFGQPLLCLMSPSSAPVAVSELNRKGSLFTMFLYSP-----LVAFSY 258
>SB_1962| Best HMM Match : Leu_leader (HMM E-Value=5.2)
Length = 140
Score = 26.6 bits (56), Expect = 10.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 82 YFGTYKYIK-NVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWSLHK 228
Y YK + N++E L+ K E SC++ P K NF + L K
Sbjct: 88 YVSVYKILGVNISEHLKWDQHVK-ETSKSCYATLRVPKKINNFTGFKLRK 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,442,606
Number of Sequences: 59808
Number of extensions: 249843
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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