Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e16
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic...    64   4e-11
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    53   8e-08
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (...    52   3e-07
At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase (S...    41   5e-04
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin...    31   0.38 
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    30   0.88 
At4g24170.1 68417.m03468 kinesin motor family protein contains P...    29   2.0  
At5g22550.2 68418.m02633 expressed protein contains Pfam profile...    27   8.2  
At5g22550.1 68418.m02632 expressed protein contains Pfam profile...    27   8.2  

>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
           to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
           gi|20530143|gb|AAM27004
          Length = 501

 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 34/83 (40%), Positives = 45/83 (54%)
 Frame = +2

Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
           EI +T LFIN +++ ++ GKTF+T +P NG+VIA +                  F  G P
Sbjct: 16  EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHG-P 74

Query: 380 WRTMDASERGALINKLADLIERD 448
           W  M   ER  LINK ADLIE +
Sbjct: 75  WPRMTGFERAKLINKFADLIEEN 97


>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 29/82 (35%), Positives = 41/82 (50%)
 Frame = +2

Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
           ++ +T L IN  +V S+ GKTF T +P  G+VIA V                  F  G P
Sbjct: 54  QVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEG-P 112

Query: 380 WRTMDASERGALINKLADLIER 445
           W  M A ER  ++ + ADL+E+
Sbjct: 113 WPKMSAYERSRVLLRFADLVEK 134


>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
           (ALDH3) nearly identical to mitochondrial aldehyde
           dehydrogenase ALDH3 [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein
          Length = 534

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 29/82 (35%), Positives = 41/82 (50%)
 Frame = +2

Query: 200 EILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSP 379
           ++ +T L I   +V +  GKTF T +P NG+VIA+V                  F  G P
Sbjct: 50  KVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEG-P 108

Query: 380 WRTMDASERGALINKLADLIER 445
           W  M A ER  ++ + ADLIE+
Sbjct: 109 WPKMTAYERSKILFRFADLIEK 130


>At1g79440.1 68414.m09258 succinate-semialdehyde dehydrogenase
           (SSADH1) similar to succinate-semialdehyde dehydrogenase
           [NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526;
           identical to succinic semialdehyde dehydrogenase mRNA,
           nuclear gene encoding mitochondrial protein GI:6684441;
           contains TIGRfam profile TIGR01780:succinic semialdehyde
           dehydrogenase; contains Pfam profile PF00171: aldehyde
           dehydrogenase (NAD) family protein
          Length = 528

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 23/79 (29%), Positives = 35/79 (44%)
 Frame = +2

Query: 203 ILYTGLFINNEWVKSSDGKTFKTENPANGQVIAEVQHXXXXXXXXXXXXXXXXFXLGSPW 382
           +L T   I  +W+ S D KT K  NPA G++IA+V                  F   + W
Sbjct: 50  LLRTQGLIGGKWLDSYDNKTIKVNNPATGEIIADVACMGTKETNDAIASSYEAF---TSW 106

Query: 383 RTMDASERGALINKLADLI 439
             + A ER  ++ +  DL+
Sbjct: 107 SRLTAGERSKVLRRWYDLL 125


>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
           (CCCH type) family protein
          Length = 248

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 88  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIHW 216
           G YK  K   E    G G+KS+ C   FS +G P  +  +F+H+
Sbjct: 19  GGYKKSKQEMESYSTGLGSKSKPCTKFFSTSGCPFGENCHFLHY 62


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 88  GTYKYIKNVAERLQIGSGAKSEFCNSCFSGTGSP-NKTGNFIHW 216
           G +K  K   E +  G G+KS+ C   FS +G P     +F+H+
Sbjct: 19  GGFKRSKQEMESISTGLGSKSKPCTKFFSTSGCPFGDNCHFLHY 62


>At4g24170.1 68417.m03468 kinesin motor family protein contains Pfam
           domain, PF00225: Kinesin motor domain
          Length = 1004

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 SPWRTMDASERGALINKLADLIERDRTYL 460
           +P R +D  ERG ++ KL +   RDR++L
Sbjct: 147 TPLRLLDDPERGTVVEKLREETLRDRSHL 175


>At5g22550.2 68418.m02633 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 492

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 70  ILSVYFGTYK----YIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWS 219
           IL  YFGT +    + KN+ + +   S +KS F ++ F G       G  +HW+
Sbjct: 397 ILENYFGTGEEVSLFFKNIGKDISF-SISKS-FLSNVFEGVNEYTSQGYHVHWA 448


>At5g22550.1 68418.m02632 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 443

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +1

Query: 70  ILSVYFGTYK----YIKNVAERLQIGSGAKSEFCNSCFSGTGSPNKTGNFIHWS 219
           IL  YFGT +    + KN+ + +   S +KS F ++ F G       G  +HW+
Sbjct: 348 ILENYFGTGEEVSLFFKNIGKDISF-SISKS-FLSNVFEGVNEYTSQGYHVHWA 399


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,442,565
Number of Sequences: 28952
Number of extensions: 181383
Number of successful extensions: 460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)