Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e15
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    27   1.9  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   5.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   7.8  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.8  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 560 GFRCPRCGATGDRAHTIKYCPQNSD 634
           G+ C RCG  G   H I+ CP N+D
Sbjct: 182 GYICYRCGQKG---HWIQACPTNAD 203


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 341 KKIVSMHETALLSLTPDQYQFLLIYVEALRQKRIG-LQKHFECAFCKKNGE 490
           KK+  +  T L   T ++Y+F+L  ++     ++G L K ++      NGE
Sbjct: 143 KKVKEIRATRLDDKTVEEYEFILAQIDNYDGDQLGELMKKYDIRNPATNGE 193


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 273  SVPSIFLVSTVICASKTAGSSFTACKASFFKMHPLSKNS 157
            S P+I L STV+    T  +SFT    S  K   L+ NS
Sbjct: 3821 SNPNI-LSSTVLSFDSTITNSFTTASTSIMKTTSLNSNS 3858


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 497 SWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDR 598
           SW+RT   +  RG V   VL G +  R G  G +
Sbjct: 84  SWWRTGLREIARGHVAALVLAGGQGTRLGFAGPK 117


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 371 LLSLTPDQYQFLLIYVEALRQKRIGLQKHFECAFCKKNGESVSWY 505
           L+  +  +Y   LI V +LRQ R+  +  F     + NG SVS+Y
Sbjct: 337 LVGTSSTRYNEALIDV-SLRQSRMSRRLGFTLRHMRINGSSVSFY 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,282
Number of Sequences: 5004
Number of extensions: 66640
Number of successful extensions: 202
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)