Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e15
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0730 + 6505759-6508806 33 0.28
12_01_0714 + 6223269-6226250 33 0.28
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 32 0.37
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 30 1.5
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766... 29 3.5
05_01_0206 + 1487034-1489430 29 3.5
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 3.5
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 29 4.6
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 29 4.6
09_02_0363 - 7871730-7871853,7871986-7872075,7872720-7872799,787... 28 8.0
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 28 8.0
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 197 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALL 376
L+ + L L I + ++D +S + E+P E ++F +++ L+
Sbjct: 875 LRGLNLSHNALTGPIPSQFGRLDQLESLDLSFNELSGEIPKELASLNFLSTLNLANNTLV 934
Query: 377 SLTPDQYQF 403
PD YQF
Sbjct: 935 GRIPDSYQF 943
>12_01_0714 + 6223269-6226250
Length = 993
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 197 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALL 376
L+ + L L I + ++D +S + E+P E ++F +++ L+
Sbjct: 853 LRGLNLSHNALTGPIPSQFCRLDQLESLDLSFNELSGEIPKELASLNFLSTLNLSNNTLV 912
Query: 377 SLTPDQYQF 403
PD YQF
Sbjct: 913 GRIPDSYQF 921
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 205 CETGSRSFGGTNNSGNEKNRWNRFYTNSSFFTRK*ITR 318
C G FGG N++ NRW R + S + R+ ++R
Sbjct: 446 CSGGHTGFGGNNSARESNNRWVRSNSTVSIYFRRVLSR 483
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 566 RCPRCGATGDRAHTIKYCPQNSD 634
R RC +R HT KYCP++ +
Sbjct: 303 RVKRCSKCDERGHTYKYCPKDKE 325
>07_03_1150 -
24375859-24376050,24376173-24376283,24376488-24376655,
24376850-24377451,24377546-24377648,24378461-24378610,
24379918-24379956
Length = 454
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 182 LKKDALQAVKLDPAVLEAQITVETRKIDGTDSTQT--QVSSQGSELPAEALRVDFK 343
LKK ALQ KL+ L++Q +E+ K+D T Q S G + A+ D K
Sbjct: 163 LKKAALQIEKLENVNLDSQCEIESLKLDLTTLEQRLFDADSFGQHVSADKAIADNK 218
>05_01_0206 + 1487034-1489430
Length = 798
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -3
Query: 249 STVICASKTAGSSFTACKASFFKMHPLSKNSGCFLMYADVDGR 121
STV CAS T SS +A A F +S G F+ V GR
Sbjct: 39 STVYCASAT-NSSSSAAVAPFVSFSQVSGGGGAFVCGLQVGGR 80
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 341 KKIVSMHETALLSLTPDQYQFLLIYVEALRQKRIGLQKHF 460
+K+ S A+L ++ DQ Q LL + L + LQKHF
Sbjct: 1861 EKVPSGTGKAILKVSEDQTQMLLNVISELPNNELLLQKHF 1900
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 273 SVPSIFLVSTVICASKT---AGSSFTACKASFFKMHPLSKNSGCFLMYADVDGRISSKVC 103
++P+ S +I ++ A S T CK +KM PLS+ + L + G ++ C
Sbjct: 315 ALPTTIHASRIIITTRINNIAESCCTPCKGFVYKMEPLSRQNSEILFVKRIFG--ANSTC 372
Query: 102 PTE 94
P++
Sbjct: 373 PSQ 375
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = -3
Query: 597 RSPVAPQRGQRNPLSTGHFTRPRPSFRACVLYHDTDSPFFLQKAHSKCFCKPIRFWRRAS 418
RS A R R+ S+ +RP+PS + + HDTD ++ H+K R RR S
Sbjct: 668 RSEPAEPRQARSSHSSRPASRPKPSGKKKISEHDTDKS---RRPHTKKSATSPRKMRRLS 724
Query: 417 T 415
+
Sbjct: 725 S 725
>09_02_0363 -
7871730-7871853,7871986-7872075,7872720-7872799,
7872881-7872964,7874944-7874992,7875114-7875240,
7875798-7875934,7876004-7876050,7876126-7876185,
7876810-7876862,7878205-7878269,7879050-7879174,
7879307-7879366,7879670-7879806,7880737-7880805,
7880889-7881045,7881121-7881235,7881855-7881916
Length = 546
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Frame = +2
Query: 212 LDPAVLEAQ--ITVETRKIDGTDSTQTQVSSQGSELPAEALRVDFKKIVSMHE------T 367
L+P LE +T ++K+D T S Q QVS E A+ + + S ++ T
Sbjct: 179 LEPKFLEDDSCLTFCSQKVDATGSFQLQVSISAQEAGAKDMSESPYSVYSYNDVPPSSLT 238
Query: 368 ALLSLTPDQYQFLLIYVEALRQKRIGLQKHFECAFC 475
++ L F Y QK + + F C FC
Sbjct: 239 HIIRLRSGNVLFNYKYYNNTMQK-TEVTEDFSCPFC 273
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 194 ALQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEA 325
AL ++LDP + V + G D T + G+ L AEA
Sbjct: 362 ALPTIELDPPTISMTFGVNDSPLSGRDGTHLTGAKIGNRLMAEA 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,675,327
Number of Sequences: 37544
Number of extensions: 434937
Number of successful extensions: 1159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -