Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e15
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35) 82 4e-16
SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27) 29 2.7
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65) 29 4.7
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9) 29 4.7
SB_21907| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=1.3e-21) 28 6.2
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_46970| Best HMM Match : zf-nanos (HMM E-Value=2.6e-35)
Length = 216
Score = 82.2 bits (194), Expect = 4e-16
Identities = 30/57 (52%), Positives = 39/57 (68%)
Frame = +2
Query: 464 CAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDRAHTIKYCPQNSD 634
C FC+ NGES Y +H LKD G CP+LR + CP C A+G ++HTIKYCP+N +
Sbjct: 152 CVFCRNNGESKKVYSSHVLKDAEGNTTCPILRAYTCPLCKASGSQSHTIKYCPKNKN 208
>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 446 LQKHFECAFCKKNGESVSWYRTHA-LKDGRGRVKCPV 553
++K F+C FCKK+ S R H L G KC V
Sbjct: 390 MEKPFQCKFCKKSFSQSSTLRNHTRLHTGEKPYKCTV 426
>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
Length = 592
Score = 29.5 bits (63), Expect = 2.7
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = -1
Query: 527 HPSEHAFCTMTLTPHFSYRRRTQNAFVNQFASGEELRRKLAGTDTD-PESKRG---VLSR 360
HP +H T + H Y RT+ V + A G +L R D+D P S R V+
Sbjct: 201 HPYQH---TKIIQLHEVYETRTELILVLELALGGDLHRHCVALDSDEPASSRSEKEVVYL 257
Query: 359 ALTQFS*SRHAEPQRVIHFLVK 294
RH Q +H +K
Sbjct: 258 LRQILEGIRHLHKQNYVHLDIK 279
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 68 VQIPFIAHHSVGQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITV 247
++ P HH+ F+ +PS +Q E + C L K Q ++ VLE +
Sbjct: 60 LECPLYVHHAFN--FDTRVPSKCVPEGQQEESRSASCKLCKHFSQNMEKQALVLEPRQQS 117
Query: 248 ETRKIDGTDSTQTQVSSQGSELP 316
+ ++ + Q+ V+ +GS P
Sbjct: 118 KAKQSLSKGARQSTVNEKGSNQP 140
>SB_37360| Best HMM Match : ETS_PEA3_N (HMM E-Value=0.65)
Length = 861
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Frame = -3
Query: 597 RSPVAPQRGQRN-----PLSTGHFTRPRPSFRACVLYHDTDSPFFLQKAHSKCFCKPI 439
RSP++P+ R LS T P S VLYH +SP KC P+
Sbjct: 263 RSPISPREQLRTIKTLESLSLDDATTPMNSCMPSVLYHSPNSPSGFSYKDGKCHENPM 320
>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
Length = 749
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 68 VQIPFIAHHSVGQTFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKLDPAVLEAQITV 247
++ P HH+ F+ +PS +Q E + C L K Q ++ VLE +
Sbjct: 60 LECPLYVHHAFN--FDTRVPSKCVPEGQQEESRSASCKLCKHFSQNMEKQALVLEPRQQS 117
Query: 248 ETRKIDGTDSTQTQVSSQGSELP 316
+ ++ + Q+ V+ +GS P
Sbjct: 118 KAKQSLSKGARQSTVNEKGSNQP 140
>SB_21907| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=1.3e-21)
Length = 380
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 450 KSILSAPSVRKMGSQCHGTERML*RMGAVG*SALYLEGSAARAVGPPGTELT 605
+S+L+ S R + ++C+G M G S + AA+++G PGT+LT
Sbjct: 102 RSVLTCESRRGVCAKCYGKNLATGYMAQKGDSVGII---AAQSIGEPGTQLT 150
>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 27.9 bits (59), Expect = 8.1
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Frame = +2
Query: 269 TDSTQTQVSSQGSELPAEALRVDFKKIVSMHETALLSLTPDQYQFLLIYVEALRQKRIGL 448
T+ + TQ + + +L E L + + HE A + D + + + V AL+QK
Sbjct: 706 TNISMTQEAYEIDKLKRELLAAKQAQESAEHEMATRNGVIDFCELVSLKVAALKQKNEYA 765
Query: 449 QKHFEC---AFCKKNGESVSWYRTHALKDGRGRVKCP-----VLRGFRCP 574
QK FE + + N +SV+ R R V P +LR RCP
Sbjct: 766 QKDFEIKLRSVEEMNRQSVNELRELLSTQQRVGVHTPHTSVSILRTRRCP 815
>SB_7547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -1
Query: 236 VPPKLRDPVSQPVRHLF 186
VPP LR PVSQPV +F
Sbjct: 64 VPPSLRLPVSQPVGRVF 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,781,386
Number of Sequences: 59808
Number of extensions: 501326
Number of successful extensions: 1275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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