Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e15
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    31   0.72 
At5g05230.1 68418.m00558 expressed protein                             31   0.95 
At2g03760.1 68415.m00336 steroid sulfotransferase, putative stro...    30   1.7  
At4g40042.1 68417.m05669 expressed protein                             29   2.2  
At4g15120.1 68417.m02323 VQ motif-containing protein contains PF...    28   5.0  
At3g08020.1 68416.m00979 PHD finger protein-related contains low...    28   6.7  
At1g62085.1 68414.m07006 mitochondrial transcription termination...    27   8.8  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    27   8.8  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    27   8.8  

>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 452 KHFECAFCKK----NGESVSWYRTHALKDGRGRVKCPVLRGFRCPRC 580
           KH +C  C+     NG+S+ W+  H   D  GR+    ++G  CP C
Sbjct: 259 KHTKCYSCESTVPGNGQSLRWFLGHTCCDACGRL---FVKGNYCPVC 302


>At5g05230.1 68418.m00558 expressed protein
          Length = 363

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 178 HFEKRCLTGCETGSRSFGGTNNSGNEKNRWNRF 276
           H  KR   G +   R+FG TN+SG  +N+ N F
Sbjct: 256 HPSKRKREGFDQERRAFGVTNHSGRSRNKSNHF 288


>At2g03760.1 68415.m00336 steroid sulfotransferase, putative strong
           similarity to steroid sulfotransferases from [Brassica
           napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam
           profile PF00685: Sulfotransferase domain
          Length = 326

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 107 TFEEILPSTSAYIKKQPEFLESGCILKKDALQAVKL 214
           T+EE+   T   +K+  EFLE G I +++  + VKL
Sbjct: 227 TYEELKKQTEVEMKRIAEFLECGFIEEEEVREIVKL 262


>At4g40042.1 68417.m05669 expressed protein
          Length = 155

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 101 GQTFEEILPSTSAYIKKQPEFLE 169
           G    EIL S+S+ +KK+PEFL+
Sbjct: 30  GSVLTEILESSSSSVKKKPEFLQ 52


>At4g15120.1 68417.m02323 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 193

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 250 NEKNRWNRFYTNSSFFT 300
           N  N W++FY N +FFT
Sbjct: 3   NSNNDWSQFYNNQTFFT 19


>At3g08020.1 68416.m00979 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 764

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 452 KHFECAFCKK----NGESVSWYRTHALKDGRGRVKCPVLRGFRCPRC 580
           KH  C  C      NG SV W+ ++   D  GR+    ++G  CP C
Sbjct: 246 KHTRCHSCDSTVPGNGLSVRWFLSYTCCDACGRL---FVKGNYCPVC 289


>At1g62085.1 68414.m07006 mitochondrial transcription termination
           factor family protein / mTERF family protein contains
           Pfam profile PF02536: mTERF
          Length = 461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 261 SMEPILHKLKFLHKEVNYPLRLCVST 338
           S E +  K +FL K++N+PL+  VST
Sbjct: 363 SAETVKKKTEFLVKKMNWPLKAVVST 388


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 333 TRRASAGNSLPCEET*VCVESVPSIFLVSTVICASKT-AGSSFTACKAS 190
           T+  S  NSL C+ T     S  +I LV++ IC + T +G+ +  C  S
Sbjct: 276 TKNLSFVNSLSCKNTKEYDNSTYNIKLVTSCICNNVTISGTDYANCGCS 324


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 621 GQYLMV*ARSPVAPQRGQRNPLSTGHFTRPR 529
           G Y++   RS   PQRG+ N  +  H ++PR
Sbjct: 735 GAYMLFYMRSYPRPQRGEHNGKAPVHHSQPR 765


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,873,034
Number of Sequences: 28952
Number of extensions: 349420
Number of successful extensions: 1038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)