Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e14
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz...    27   0.83 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   1.9  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   1.9  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   3.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   3.4  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    24   5.9  

>SPAC4D7.05 |sum1|tif34|translation initiation factor
           eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 263 DDGHLSHYSAGADHGEFASHGHVTDAGAAVPSTAAVPDRT 144
           +DG +S Y A    GEF     V ++G+ +      PDRT
Sbjct: 167 EDGSVSRYDAIT--GEFVESKQVHNSGSTITDLQFYPDRT 204


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
 Frame = -3

Query: 317  EMETEPTAQAGPRELDRADDGHLSHYSAGADHGE-FASHGHVTDAGAAVPSTAAVPDRTV 141
            EM+T     +G R + R+ +       +G++ G   A      + G +    +     + 
Sbjct: 711  EMDTNMVIDSGSRRVTRSQNATSQSQESGSEIGSSIAGTAGSYNVGTSNTQLSWPSTHST 770

Query: 140  PRSTERSAIWT*RR-STGTHTTQALTVHIMEQASLDTDREHNEV 12
              +T R    + R  +TGT     ++  + EQ+++   RE   V
Sbjct: 771  LPATSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSV 814


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 280 ANSTAPMTGTCPITALEPTTGSSPATATL 194
           +NST P T   P T+  PT+ S  + +T+
Sbjct: 111 SNSTIPTTSPVPTTSSTPTSSSILSNSTI 139



 Score = 25.4 bits (53), Expect = 2.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 283 PANSTAPMTGTCPITALEPTTGSSPATATL 194
           P +S+     T P T+  PTT S+P ++++
Sbjct: 104 PTSSSILSNSTIPTTSPVPTTSSTPTSSSI 133



 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 280 ANSTAPMTGTCPITALEPTTGSSPATATL 194
           +NST   + + PITA  PT+ S  + +T+
Sbjct: 87  SNSTISTSSSTPITASVPTSSSILSNSTI 115


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -2

Query: 138  QVHREVRHMDLKEVHRDPHDPSTDCTHYGTGKPGYRSRTQ 19
            +++R++R        +  HD S D  H    KP Y  R Q
Sbjct: 910  KIYRKLREFRRGLEGKSNHDHSKDRRHSRARKPAYADRNQ 949


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 277 NSTAPMTGTCPITALEPTTGSSPATAT 197
           NST P+T T P T+   T+   P  +T
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPPPPAST 322



 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 277 NSTAPMTGTCPITALEPTTGSSPATAT 197
           NST P+T T P T+   T+   P  +T
Sbjct: 350 NSTTPVTPTVPPTSTSSTSTPPPPAST 376


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 23  VRDLYPGLPVP*CVQSVLGS 82
           VR L+PGL +P C+ S+  S
Sbjct: 218 VRILFPGLHIPNCLLSLYNS 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,076,160
Number of Sequences: 5004
Number of extensions: 15039
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)