Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e14
(349 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0021 + 21574563-21574650,21575094-21575220,21575254-215753... 29 0.76
08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699 28 1.8
04_04_0347 + 24564589-24565296 28 1.8
09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426 27 3.1
09_02_0453 - 9502060-9502773,9502795-9503367 27 3.1
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 3.1
03_02_0237 - 6674145-6674354,6674458-6675087,6675135-6675541,667... 27 3.1
01_01_0190 + 1656376-1656565,1656655-1657388 27 5.3
12_01_0802 - 7369627-7370157,7370635-7370682 26 7.1
05_04_0250 + 19370155-19370690,19370888-19370948,19371240-193712... 26 7.1
03_04_0029 - 16610182-16611753 26 7.1
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 26 9.3
04_04_1057 - 30451759-30452523,30452627-30452701,30453180-304532... 26 9.3
04_03_0060 - 10511421-10512494 26 9.3
>05_05_0021 +
21574563-21574650,21575094-21575220,21575254-21575372,
21575687-21575769,21575902-21576129,21576697-21576744,
21576831-21576890,21576978-21577116,21577303-21577574,
21577683-21577922,21577983-21577991
Length = 470
Score = 29.5 bits (63), Expect = 0.76
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = -3
Query: 311 ETEPTAQAGPRELDRADDGHLSHYSAGADHGEFASHGHVTDAG--AAVPSTAAVPDRTVP 138
E +P A A EL++A H + AG DHG S + AG AA P T + + P
Sbjct: 73 ELQPAAAAYFGELEKALI-HGTSAGAGVDHGMIQSDAYTESAGYLAARPPTLEI-FPSWP 130
Query: 137 RSTERSAIWT*RRSTGTHTTQALTVHIMEQASL 39
S + +S G+ T + + M QA L
Sbjct: 131 MSHLQEPYSQNSQSVGSTTDSSSAQNTMSQAEL 163
>08_01_0698 + 6162127-6162160,6162317-6162512,6162654-6162699
Length = 91
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -3
Query: 347 PHPQVXPHAPEMETEPTAQAGPRELDRADDGHLSHYSAGADHGEFASHGH 198
P+P + + P A P DG Y AGA GE S GH
Sbjct: 14 PYPAQEAGQQQQQAYPAYVAPPPAGYPTKDGPQEQYPAGAGAGETTSRGH 63
>04_04_0347 + 24564589-24565296
Length = 235
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 181 APASVTWPWLANSPWSAPAL 240
AP +WPW A++P APA+
Sbjct: 126 APVHSSWPWPAHAPAPAPAV 145
>09_06_0046 + 20467240-20467586,20467627-20468116,20468815-20469426
Length = 482
Score = 27.5 bits (58), Expect = 3.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 190 SVTWPWLANSPWSAPA 237
+++WPW +SP +APA
Sbjct: 115 NISWPWRTSSPLAAPA 130
>09_02_0453 - 9502060-9502773,9502795-9503367
Length = 428
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 118 ADLSVDLGTVLSGTAAVEGTAAPASVTWPWLANSPWS 228
A +S DLGT TA V G S WPW + PWS
Sbjct: 194 AGVSADLGTA---TAFVFG-----SERWPWPCDRPWS 222
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 245 HYSAGADHGEFASHGHVTDAGAAVPSTAAVPD 150
H AG +HG HGHV D +AV S + V +
Sbjct: 2822 HCHAGEEHGHQHHHGHVHD--SAVSSVSIVSE 2851
>03_02_0237 -
6674145-6674354,6674458-6675087,6675135-6675541,
6677206-6677253,6677630-6677702
Length = 455
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 154 GTAAVEGTAAPASVTWPWLANSP 222
G AA GTAAPA+VT + N+P
Sbjct: 367 GLAAAPGTAAPATVTPVTVQNTP 389
>01_01_0190 + 1656376-1656565,1656655-1657388
Length = 307
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 257 GHLSHYSAGADHGEFASHGHVTDAGAAVPSTAAVPDRTVPRST 129
G LSH SA D S GH D V + PR+T
Sbjct: 204 GALSHESASHDAAPPESEGHSNDTADTVDGSHVSQSEPEPRAT 246
>12_01_0802 - 7369627-7370157,7370635-7370682
Length = 192
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -3
Query: 302 PTAQAGPRELDRADDGHLSHYSAGADHGEFASHGHVTDAGAAVPS 168
PT G LD D H+ H EFA+HG AG P+
Sbjct: 29 PTENLGSMNLDVVDHCHVV-VDLDRCHPEFAAHGGCHHAGFGDPA 72
>05_04_0250 +
19370155-19370690,19370888-19370948,19371240-19371261,
19372395-19372452,19372580-19372652,19372907-19372999
Length = 280
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = -3
Query: 239 SAGADHGEFASHGHVTDAGAAV-----PSTAAVPDRTVP 138
+ GA +FA H + A AAV P+TAA D P
Sbjct: 29 ACGASRRDFAIHTAIASASAAVAVSVRPATAAAADEEAP 67
>03_04_0029 - 16610182-16611753
Length = 523
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +1
Query: 133 DLGTVLSGTAAVEGTAAPASVTWPWLANSPWSAPA 237
D+G+V++ T + TAAPA+ + P +A+ S+P+
Sbjct: 57 DIGSVVAQTLSPPSTAAPAAAS-PSIASPAASSPS 90
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 25.8 bits (54), Expect = 9.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 90 DPHDPSTDCTHYGTGKPGYRSRTQR 16
+ DPS DC G +P + +T+R
Sbjct: 389 EEEDPSKDCIEIGEYEPNQKGQTER 413
>04_04_1057 -
30451759-30452523,30452627-30452701,30453180-30453254,
30453503-30453591,30454058-30454157,30454244-30454388,
30454609-30454658,30455033-30455114,30455200-30455282,
30455360-30455429,30455523-30455632,30455719-30455872,
30456639-30456796,30457338-30457517
Length = 711
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 242 YSAGADHGEFASHG-HVTDAGAA 177
YS G+ +G F SHG +V +AG A
Sbjct: 477 YSYGSSYGSFGSHGSYVGNAGHA 499
>04_03_0060 - 10511421-10512494
Length = 357
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +1
Query: 157 TAAVEGTAAPASVTWPWL 210
T AV TA S WPWL
Sbjct: 296 TRAVRATAEVVSAEWPWL 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,308
Number of Sequences: 37544
Number of extensions: 129250
Number of successful extensions: 652
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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