Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e14
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   1.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    20   7.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.6  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 33 CIQACLFHNV 62
          CI+ACLFH +
Sbjct: 55 CIEACLFHRL 64


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -3

Query: 347 PHPQVXPHAPEMETEPTAQAGP 282
           P P   P AP+  + P    GP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGP 46


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 77  GSCGSRWTSFRSIW 118
           G C  R TSF+ +W
Sbjct: 77  GVCICRKTSFKDLW 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 52   NRQAWIQIANTTK 14
            N+Q W Q++N  K
Sbjct: 1502 NQQEWNQVSNNVK 1514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,835
Number of Sequences: 438
Number of extensions: 1324
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)