Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e14
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47760.1 68416.m05203 ABC transporter family protein probable...    29   1.1  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    29   1.1  
At3g47740.1 68416.m05201 ABC transporter family protein ATP bind...    28   1.5  
At1g32560.1 68414.m04018 late embryogenesis abundant group 1 dom...    27   3.4  
At4g10660.1 68417.m01741 hypothetical protein                          26   6.0  
At1g24267.1 68414.m03062 expressed protein                             26   7.9  

>At3g47760.1 68416.m05203 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 872

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 125 RSAIWT*RRSTGTHTTQALTVHIMEQASLDTDR 27
           R ++WT  +    HT   LT H ME+A    DR
Sbjct: 724 RRSLWTAIKRAKNHTAIILTTHSMEEAEFLCDR 756


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 125 RSAIWT*RRSTGTHTTQALTVHIMEQASLDTDR 27
           R ++WT  +    HT   LT H ME+A    DR
Sbjct: 796 RRSLWTAIKGAKKHTAIILTTHSMEEAEFLCDR 828


>At3g47740.1 68416.m05201 ABC transporter family protein ATP binding
           cassette transporter ABC1, Homo sapiens, PIR2:A54774
          Length = 947

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 125 RSAIWT*RRSTGTHTTQALTVHIMEQASLDTDR 27
           R  +WT  ++   HT   LT H ME+A    DR
Sbjct: 799 RKNLWTVIKNAKRHTAIILTTHSMEEAEFLCDR 831


>At1g32560.1 68414.m04018 late embryogenesis abundant group 1
           domain-containing protein / LEA group 1
           domain-containing protein contains Pfam domain, PF03760:
           Late embryogenesis abundant (LEA) group 1
          Length = 134

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -3

Query: 209 SHGHVTDAGAAVPSTAAVP 153
           SH HVTD G  VP  A VP
Sbjct: 76  SHYHVTDHGPHVPQQAPVP 94


>At4g10660.1 68417.m01741 hypothetical protein
          Length = 317

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 280 ANSTAPMTGTCPITALEPTT 221
           A S+AP +GTC + AL P T
Sbjct: 96  AFSSAPTSGTCVVLALRPFT 115


>At1g24267.1 68414.m03062 expressed protein 
          Length = 343

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 233 GADHGEFASHGHVTDAGAAVPSTAAVP 153
           GA H +   +  + ++  A+PST+AVP
Sbjct: 220 GALHAQVRENKRIQESNKALPSTSAVP 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,976,356
Number of Sequences: 28952
Number of extensions: 85922
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)