Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e13
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.98 
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   1.3  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   2.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    27   2.3  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   6.9  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    25   6.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   6.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   9.1  

>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 328 PIRKLYVTN--LPPKVKLWTVMI 390
           P+ K+++TN  LPPK+  W +MI
Sbjct: 517 PVLKMFLTNEHLPPKLSPWNMMI 539


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 17  VHPYIPIEILICVEIEKIFSDFKI 88
           ++P IP+    CV+++K+F+D  +
Sbjct: 212 INPLIPLTQKFCVQLQKLFADLTV 235


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/64 (23%), Positives = 26/64 (40%)
 Frame = +1

Query: 172 N*KNTIMYNDEEDNERYFSPDLLHVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVT 351
           N K T +  +EED      P   H        +   A   ++   + T+D +P+R +   
Sbjct: 91  NGKKTAVVKEEEDFNEIAKPSPKHKRVSKANGSKNGAKSAVKKEESDTDDSVPLRAVSTV 150

Query: 352 NLPP 363
           +L P
Sbjct: 151 SLTP 154


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -3

Query: 521 LRTVSP-AFKHLVNTVINFYLSKDT 450
           +R+VS   ++HL+N  +NF+LSK T
Sbjct: 195 IRSVSSNVYQHLLNLDMNFHLSKQT 219


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 241 HVVRIATISNLELAPYGIRSVPTKTEDGIPIRKLYVTNLPPKVKL 375
           +V R+ + +    AP G   +P  T    P++ +YV NLPP   +
Sbjct: 87  NVSRVTSPNVANFAP-GYFPLPNNTTQ--PVKTVYVGNLPPNTPI 128


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 383 TVQSFTLGGKLVT*SFLIGIPSSVFVGTLLIPYGASSRFEI 261
           T+ +FT+ G LV  S  I   S   + T+L PY  S    I
Sbjct: 144 TIGTFTVSGLLVAVSVGIAHSSLSRLYTILFPYAGSEHTHI 184


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 131 NAHVTYKEKQQVIVKF*NH-*IFFQSQ 54
           N H+  K+KQ++I    +H  +FFQ+Q
Sbjct: 345 NVHIYQKKKQELIASVDSHLYVFFQAQ 371


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 363 QGKTLDCYDIKTKPLKL 413
           QGK L  YD+K+ PL++
Sbjct: 570 QGKRLQIYDLKSVPLEI 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,151
Number of Sequences: 5004
Number of extensions: 44144
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)