Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e13
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_34905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_14358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  LNVHPYIP--IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           ++VH  IP  I +L+CV +  I  +     ++ + +C+ HVH IIP LI
Sbjct: 72  VHVHLIIPNLIALLVCVHVRLIIPN-----MITLLMCV-HVHLIIPNLI 114



 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  LNVHPYIP--IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           ++VH  IP  I +L+CV +  I  +     L+   +C+ HVH IIP +I
Sbjct: 136 VHVHLIIPNLIALLVCVHVHLIIPN-----LITPLVCV-HVHLIIPNMI 178



 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  LNVHPYIP--IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           +++H  IP  I  L+CV +  I  +     L+ + +C+ HVH IIP LI
Sbjct: 120 VHIHLIIPNMITPLVCVHVHLIIPN-----LIALLVCV-HVHLIIPNLI 162



 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  LNVHPYIP--IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           ++ H  IP  I +L+CV +  I  +F     +   +C+ HVH IIP +I
Sbjct: 24  VHAHLIIPNLITLLVCVHVHLIIPNF-----IAPLVCV-HVHLIIPNMI 66



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 11  LNVHPYIP--IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           ++VH  IP  I +L+CV    I  +     L+ + +C+ HVH IIP  I
Sbjct: 8   VHVHLIIPNLITLLVCVHAHLIIPN-----LITLLVCV-HVHLIIPNFI 50



 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 35  IEILICVEIEKIFSDFKI*QLLVVFLCM*HVHFIIPKLI 151
           I +L+CV +  I  +     L+ + +C+ H H IIP LI
Sbjct: 2   ITLLVCVHVHLIIPN-----LITLLVCV-HAHLIIPNLI 34


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 106 FSLYVTCAFYNTETYLKHNSFLN*KNTIMYNDEEDNERYFSPDLLHVVR 252
           FS+Y  C  ++    L+H  ++     I+Y D  +N RY    +L+  R
Sbjct: 66  FSIYEVCTSFSIPDRLEHVRYMG--EFILYTDRRENVRYMGEFILYTDR 112


>SB_34905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 286 YGIRSVPTKTEDGIPI-RKLYVTNLPPKVKLWTVM 387
           Y + + P++   GI I R   V +L PK+KLW  M
Sbjct: 190 YQVPNAPSEISSGIGIERSNAVMSLVPKIKLWDGM 224


>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 206 KTTRDILVQIYFMSFALPLFQILN*LRTGLGVYPQKLKMEYRLESFT 346
           K   + +V  Y  SF  P+    +    G   YP+K+K E  LE F+
Sbjct: 152 KAAAECIVMSYLESFKFPVIITRSNNVYGPHQYPEKIKGEQSLEQFS 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,984
Number of Sequences: 59808
Number of extensions: 296146
Number of successful extensions: 545
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)