Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e11
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.3  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   3.3  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 106 QELQQTQSSIIFADEETTVSIEELPITENIESS 204
           Q LQ+    ++  +EET   I  + I EN+  S
Sbjct: 337 QVLQRESFDVVAQNEETLQMIVSMKIMENLPQS 369


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 251 MKEN-KIGWIFSWDQTLIYILRLQW 322
           M+EN K+ W+F  +  L+  + L+W
Sbjct: 238 MQENDKMSWLFESEDVLLPSVYLRW 262


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 478 NNLRKKRSTETPVDSSQLIMRLLKHIK 558
           NN+++KRS   P +S+Q   +   H K
Sbjct: 39  NNIKRKRSWSRPRESAQTTSKAGIHRK 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.126    0.349 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,953
Number of Sequences: 438
Number of extensions: 2530
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)