Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e10
(641 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 114 4e-26
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 108 3e-24
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 107 5e-24
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 103 8e-23
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 92 2e-19
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 90 1e-18
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 89 2e-18
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 86 2e-17
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 85 4e-17
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 79 3e-15
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 78 4e-15
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 78 4e-15
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 76 2e-14
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 75 3e-14
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 75 3e-14
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 75 5e-14
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 74 9e-14
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 71 5e-13
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 69 4e-12
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 64 6e-11
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 63 1e-10
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 60 1e-09
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 60 1e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 59 2e-09
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 59 2e-09
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 57 1e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 56 2e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 55 3e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 55 5e-08
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 54 6e-08
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 54 6e-08
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 54 8e-08
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 54 1e-07
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 54 1e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 54 1e-07
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 54 1e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 53 2e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 2e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 2e-07
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 52 2e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 52 2e-07
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 52 4e-07
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 52 4e-07
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 8e-07
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 50 1e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 1e-06
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 50 2e-06
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 50 2e-06
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 50 2e-06
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 49 2e-06
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 49 3e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 49 3e-06
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 48 5e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 9e-06
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 47 9e-06
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 47 1e-05
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 47 1e-05
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 47 1e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 46 2e-05
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 46 2e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 46 2e-05
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 46 2e-05
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 46 2e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 45 4e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 45 4e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 45 4e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 45 5e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 45 5e-05
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 45 5e-05
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 44 7e-05
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 44 9e-05
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 44 9e-05
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 44 1e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 44 1e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 43 2e-04
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 43 2e-04
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 42 5e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 42 5e-04
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 41 8e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 41 8e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 40 0.001
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 40 0.002
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 40 0.002
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 39 0.002
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 39 0.002
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 39 0.002
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 39 0.002
At4g10610.1 68417.m01735 RNA-binding protein, putative 39 0.003
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 38 0.004
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 38 0.004
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 38 0.004
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 38 0.004
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 38 0.004
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 38 0.004
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 38 0.004
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.006
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.006
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 38 0.006
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 38 0.006
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.006
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 38 0.006
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 38 0.006
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 38 0.007
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 38 0.007
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.010
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 37 0.010
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 37 0.013
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.013
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.017
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 36 0.017
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.017
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 36 0.017
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 36 0.023
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.023
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 36 0.030
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 36 0.030
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 35 0.053
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 34 0.070
At5g24440.1 68418.m02880 RNA-binding protein, putative 34 0.092
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 34 0.092
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.16
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 33 0.21
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 33 0.21
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.21
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.21
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 33 0.21
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.28
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.28
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.28
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 0.37
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.37
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.37
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 31 0.49
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.49
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.65
At2g45260.1 68415.m05634 expressed protein contains Pfam profile... 31 0.65
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.86
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.86
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 31 0.86
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 30 1.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 1.1
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 30 1.1
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 1.1
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 30 1.1
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 30 1.1
At1g05400.1 68414.m00548 hypothetical protein contains Pfam prof... 30 1.5
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.6
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.5
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.5
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 29 3.5
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 28 4.6
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 4.6
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 28 6.1
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 8.0
At3g24440.1 68416.m03067 fibronectin type III domain-containing ... 27 8.0
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 27 8.0
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 114 bits (275), Expect = 4e-26
Identities = 57/156 (36%), Positives = 91/156 (58%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 352
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 533 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
S+ R++ D +T +S+G+ FVSF + DA+ AI MN
Sbjct: 175 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 210
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 176 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 343
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 263 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 319
Query: 344 XXXXXXMNKRVVL-DKEMKVNWATSP 418
N + L ++++ +W P
Sbjct: 320 ALAIQMGNAQPFLFSRQIRCSWGNKP 345
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+P N P+ T ++VG+LSPE+ L F G ++ + + + KG+ FV
Sbjct: 261 APENNPQFTT-----VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311
Query: 593 SFVKKADAEAAIQAMN 640
+ +A AIQ N
Sbjct: 312 RYNTHDEAALAIQMGN 327
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 108 bits (260), Expect = 3e-24
Identities = 58/156 (37%), Positives = 90/156 (57%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 352
D S +++YVGN+ VTE L +F G V+ K+IR+ + Y F+ +
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALA 112
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 533 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
S+ R++ D +T +S+G+ FVSF + DA+ AI MN
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Score = 34.3 bits (75), Expect = 0.070
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 364
T+YVGNL P VT++ L F +G ++ ++ R+ G + F+ + H
Sbjct: 266 TVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKG---FGFVRYNTHPEAALAIQMG 322
Query: 365 NKRVVL-DKEMKVNWATSP 418
N + L ++++K +W P
Sbjct: 323 NTQPYLFNRQIKCSWGNKP 341
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG+L+PE+ L F G ++ + + + KG+ FV + +A AIQ
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMG 322
Query: 638 N 640
N
Sbjct: 323 N 323
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 107 bits (258), Expect = 5e-24
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 352
D + +++Y GN+ VTE+ L +F G ++ CK+IR+ + Y F+ +
Sbjct: 58 DPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMA 116
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+N R + + MKVNWA + G + DTS+H +IFVGDLSPE+ L ++F+ F
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 533 S----NCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
S + R++ D +T +S+G+ FVSF + DA+ AI MN
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 214
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 176 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXX 343
E++P+ T+YVGNL P VT++ L LF +G ++ ++ R+ G + F+ + H
Sbjct: 267 ENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKG---FGFVRYNTHDEA 323
Query: 344 XXXXXXMNKRVVL-DKEMKVNWATSP 418
N + L ++++ +W P
Sbjct: 324 ALAIQMGNAQPFLFSRQIRCSWGNKP 349
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+P N P+ T ++VG+LSPE+ L F G ++ + + + KG+ FV
Sbjct: 265 APENNPQFTT-----VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315
Query: 593 SFVKKADAEAAIQAMN 640
+ +A AIQ N
Sbjct: 316 RYNTHDEAALAIQMGN 331
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 103 bits (248), Expect = 8e-23
Identities = 56/152 (36%), Positives = 88/152 (57%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 352
D S +++YVGN+ VTE L +F G V+ CK+IR+ + Y F+ +
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLA 107
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+N R + + +KVNWA + G + DTS+H +IFVGDLSPE+ +L F+ +
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 533 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
S+ R++ D +T +S+G+ FVSF + DA+ AI
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 197
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +2
Query: 428 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 607
P D S ++VG++ ++ +L+E FA G + +C+++R + Y FV + +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDR 101
Query: 608 ADAEAAIQAMN 640
A AI ++N
Sbjct: 102 RSAGLAILSLN 112
Score = 35.1 bits (77), Expect = 0.040
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGD--VKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 364
T+YVGNL P V++V L F +G ++ ++ R+ G + F+ ++ H
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKG---FGFVRYSTHVEAALAIQMG 317
Query: 365 NKRVVLD-KEMKVNWATSP 418
N L ++MK +W + P
Sbjct: 318 NTHSYLSGRQMKCSWGSKP 336
Score = 34.7 bits (76), Expect = 0.053
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = +2
Query: 410 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
T+ G P+ + + + ++VG+L+PE+ L F G ++ + + + KG+ F
Sbjct: 247 TTNGEAPENN-AQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGF 301
Query: 590 VSFVKKADAEAAIQAMN 640
V + +A AIQ N
Sbjct: 302 VRYSTHVEAALAIQMGN 318
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 92.3 bits (219), Expect = 2e-19
Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 6/157 (3%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP--GN-DPYAFLEFTCHXXXXXXXX 358
+TL++G+L V E +L + F Q G++ K+IR G + Y F+EF H
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 359 XMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFGE 529
N + E+ ++NWA S G+ K D H IFVGDL+P++ +L+E F +
Sbjct: 84 TYNGTQMPGTELTFRLNWA-SFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSS 142
Query: 530 ISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ ++V DP T +SKGY FV F ++++ A+ MN
Sbjct: 143 VRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
T+ V NLD +VTE L F Q+G+V KI P Y +++F M
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 371 RVVLDKEMKVNWATSPG 421
+V+ + ++++W+ +PG
Sbjct: 295 QVIGQQAVRISWSKNPG 311
Score = 33.9 bits (74), Expect = 0.092
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
I V +L + L++AF+ GE+ +I P T KGY +V F + AE A+Q M
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKI---PAT---KGYGYVQFKTRPSAEEAVQRM 292
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 89.8 bits (213), Expect = 1e-18
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN---DPYAFLEFTCH 334
N G ++L++G+L P + E +L +FG G+ K+IR N + Y F+EF H
Sbjct: 72 NPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNH 131
Query: 335 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 508
N + E ++NWA + + H +FVGDL+P++ ++L E
Sbjct: 132 ATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTE 191
Query: 509 AF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F A + + ++V D T +SKGY FV F +++ A+ MN
Sbjct: 192 TFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMN 236
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/74 (32%), Positives = 38/74 (51%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G+Q +++GDL P ++ N L F GE + +++R+ Q S+GY F+ F
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEF 128
Query: 599 VKKADAEAAIQAMN 640
V A AE +Q N
Sbjct: 129 VNHATAERNLQTYN 142
Score = 46.8 bits (106), Expect = 1e-05
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 18/173 (10%)
Frame = +2
Query: 176 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 343
E T++VG+L P VT+ L F + VKG K++ R G Y F+ F
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 344 XXXXXXMNKRVVLDKEMKV--------------NWATSPGNQPKTDTSNHHHIFVGDLSP 481
MN + + M+ ++ + GN ++D +N IFVG +
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT-IFVGAVDQ 287
Query: 482 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + L+ F FGE+ + +I K FV + +A AE A+ +N
Sbjct: 288 SVTEDDLKSVFGQFGELVHVKIP------AGKRCGFVQYANRACAEQALSVLN 334
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +2
Query: 176 ESHPK--TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXX 349
ES P T++VG +D SVTE L ++FGQ G++ KI P F+++
Sbjct: 272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAGKRCGFVQYANRACAEQ 328
Query: 350 XXXXMNKRVVLDKEMKVNWATSPGNQ 427
+N + + ++++W SP N+
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNK 354
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 89.0 bits (211), Expect = 2e-18
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Frame = +2
Query: 167 MGDESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHX 337
+ D++HP + LY G+LDP VTE L LF + +V ++ R+ YA++ F+
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 338 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA 517
+N + D+ +++ + P T S +IF+ +L I+ L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSN---RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 518 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
FG I +C++ D T +SKGY FV F K+ A+AAI +N
Sbjct: 158 SFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLN 197
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 295
N ++S LY+ NLD SV + L +F + G+V K++ P
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP 367
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 85.8 bits (203), Expect = 2e-17
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 7/166 (4%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCH 334
N G S K+L++G+L + E ++ ++F Q G+ K+IR ++ Y F+EF H
Sbjct: 52 NPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSH 111
Query: 335 XXXXXXXXXMNKRVVLDKEM--KVNWATSPGNQPKTDTSNHHH-IFVGDLSPEIETNILR 505
N + E ++NWA + + + T H IFVGDL+PE+ +L
Sbjct: 112 SVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLS 171
Query: 506 EAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ F +G + ++V D T +SKGY FV F + + A+ MN
Sbjct: 172 DTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMN 217
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G+Q S+ +++GDL ++ N + FA GE ++ +++R+ T +S+GY F+ F
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Query: 599 VKKADAEAAIQAMN 640
V + AE +Q N
Sbjct: 109 VSHSVAERVLQTYN 122
Score = 51.6 bits (118), Expect = 4e-07
Identities = 46/173 (26%), Positives = 70/173 (40%), Gaps = 18/173 (10%)
Frame = +2
Query: 176 ESHPKTLYVGNLDPSVTEVFLCTLFGQI-GDVKGCKII--REPGNDP-YAFLEFTCHXXX 343
E T++VG+L P VT+ L F + G VKG K++ R G Y F+ F
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 344 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKT--------------DTSNHHHIFVGDLSP 481
MN + + M++ A + P + N+ IFVG L
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 482 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + L+ F FGE+ + +I K FV + KA AE A+ +N
Sbjct: 270 NVTDDELKSIFGQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLN 316
Score = 41.5 bits (93), Expect = 5e-04
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 161 ANMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHX 337
AN GD + + T++VG LD +VT+ L ++FGQ G++ KI P F+++
Sbjct: 250 ANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKA 306
Query: 338 XXXXXXXXMNKRVVLDKEMKVNWATSPGNQ 427
+N + + ++++W SP Q
Sbjct: 307 SAEHALSVLNGTQLGGQSIRLSWGRSPNKQ 336
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 85.0 bits (201), Expect = 4e-17
Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Frame = +2
Query: 176 ESHPKT-LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXX 346
++HP + LYVG+LDPSV E L LF Q+ V ++ R+ + YA++ F
Sbjct: 40 QTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDAS 99
Query: 347 XXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG 526
+N + D+ +++ + P T S ++F+ +L I+ L E F+ FG
Sbjct: 100 RAMESLNYAPIRDRPIRIMLS---NRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG 156
Query: 527 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
I +C++ D +SKGY FV F K+ A+AAI +N
Sbjct: 157 TILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLN 193
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/164 (20%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGND-PYAFLEFTCHXXXXXXXXXMN 367
+YV NL +T+ L FG+ GD+ +++ + GN + F+ F MN
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 368 -------------KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 508
+ D+E ++ + + ++++ +L + L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F+ +G +++C+++ + Q L S+G+ FV++ +A A++ MN
Sbjct: 347 MFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMN 389
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 78.6 bits (185), Expect = 3e-15
Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%)
Frame = +2
Query: 170 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXX 340
G KTL+VG+L + E +L + F G+V K+IR ++ Y F+EF
Sbjct: 102 GSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAA 161
Query: 341 XXXXXXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 511
+ V+ D+ ++NWA+ S G + + +FVGDLSP++ +L E
Sbjct: 162 AEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHET 221
Query: 512 FAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F+ + + + ++V D T +SKGY FV F + + A+ MN
Sbjct: 222 FSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMN 265
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +2
Query: 401 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 580
N + G+Q +++N IFVG + P++ LR+ F+ FGE+ + +I KG
Sbjct: 305 NGSMGYGSQSDGESTNAT-IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP------VGKG 357
Query: 581 YAFVSFVKKADAEAAIQAMN 640
FV F + AE AI+++N
Sbjct: 358 CGFVQFADRKSAEDAIESLN 377
Score = 41.1 bits (92), Expect = 6e-04
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +2
Query: 176 ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXX 355
ES T++VG +DP V + L F Q G+V KI P F++F
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVGKGCGFVQFADRKSAEDAI 373
Query: 356 XXMNKRVVLDKEMKVNWATSPGNQPKTDT 442
+N V+ ++++W SP Q + D+
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDS 402
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 78.2 bits (184), Expect = 4e-15
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 352
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 353 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-P 520
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 521 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + ++V D T +SKGY FV F + + A+ MN
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 78.2 bits (184), Expect = 4e-15
Identities = 50/160 (31%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 352
KT++VG+L + E +L + F G ++ K+IR N + Y F+EF H
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 353 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFA-P 520
N + D+ ++NWA+ S G + + IFVGDLSP++ N+L E F+
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEK 220
Query: 521 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + ++V D T +SKGY FV F + + A+ MN
Sbjct: 221 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 260
Score = 41.5 bits (93), Expect = 5e-04
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 358
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 359 XMNKRVVLDKEMKVNWAT---SPGNQ-------------PKTDTSNHHHIFVGDLSPEIE 490
MN + M++ AT + G Q P+ D N IFVG L +
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTT-IFVGGLDSSVT 316
Query: 491 TNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
L++ F FGEI + +I KG FV FV + +AE A++ +N
Sbjct: 317 DEDLKQPFNEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLN 360
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 361
Query: 371 RVVLDKEMKVNWATSPGN-QPKTDTSN 448
V+ + ++++W +P N QP+ N
Sbjct: 362 TVIGKQTVRLSWGRNPANKQPRDKYGN 388
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 76.2 bits (179), Expect = 2e-14
Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCHXXX 343
+ + T+YVG LD ++E L LF Q G V + ++ + Y F+E+
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 344 XXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPF 523
+N + K ++VN A+ Q K ++F+G+L P+++ +L + F+ F
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 524 GEI-SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
G I SN +I+RDP T S+G+ F+S+ ++AAI++M
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESM 174
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG L ++ +L E F G + N + +D T + Y F+ + + DA+ AI+ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 638 N 640
N
Sbjct: 87 N 87
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 75.4 bits (177), Expect = 3e-14
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 358
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 359 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 526
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 527 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ ++V D T ++KGY FV F +++ A+ MN
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +GY
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 587 FVSFVKKADAEAAIQAMN 640
F+ F A AE +Q N
Sbjct: 107 FIEFASHAAAERVLQTFN 124
Score = 44.4 bits (100), Expect = 7e-05
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 340
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 341 XXXXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTS----------NHHHIFVGDLS 478
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 479 PEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + L+ F+ +GEI + +I K FV F +K+ AE A++ +N
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLN 317
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
T++VG LD SVT+ L +F Q G++ KI P F++F+ +N
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLNG 318
Query: 371 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 457
+ ++++W SP N+ D S ++
Sbjct: 319 VQLGGTTVRLSWGRSPSNKQSGDPSQFYY 347
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 75.4 bits (177), Expect = 3e-14
Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 7/158 (4%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGN-DPYAFLEFTCHXXXXXXXX 358
+TL++G+L + E FL F G++ K+IR + G + Y F+EF H
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 359 XMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF-APFG 526
N + D+ ++NWA S + K D S + IFVGDL+ ++ IL E F A +
Sbjct: 122 TFNNAPIPSFPDQLFRLNWA-SLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 527 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ ++V D T ++KGY FV F +++ A+ MN
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMN 218
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/78 (33%), Positives = 41/78 (52%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
A P QP T +++GDL ++ N L FA GE+ + +++R+ QT + +GY
Sbjct: 48 AAPPSVQPTT-ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYG 106
Query: 587 FVSFVKKADAEAAIQAMN 640
F+ F A AE +Q N
Sbjct: 107 FIEFASHAAAERVLQTFN 124
Score = 37.5 bits (83), Expect = 0.007
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLF-GQIGDVKGCKII--REPGNDP-YAFLEFTCHXX 340
D+S T++VG+L VT+ L F VKG K++ R G Y F+ F+
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 341 XXXXXXXMNKRVVLDKEMKVNWATS----PGNQPKTDTS----------NHHHIFVGDLS 478
MN + M++ A S G + +S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 479 PEIETNILREAFAPFGEISNCRI 547
+ + L+ F+ +GEI + +I
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKI 292
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFT 328
T++VG LD SVT+ L +F Q G++ KI P F++F+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFS 304
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 74.5 bits (175), Expect = 5e-14
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGNDP-YAFLEFTCHXXXXXXXXXMN 367
++V NL SVT L +F + G++ CK+ E G Y F++F +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 368 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 547
+V DKE+ V ++ K + + ++++ +L ++ ++LRE FA FG+I + I
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE-EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 548 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+D L +GYAFV+F DA A + +N
Sbjct: 233 AKDENRL-CRGYAFVNFDNPEDARRAAETVN 262
Score = 68.1 bits (159), Expect = 5e-12
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Frame = +2
Query: 161 ANMGDESHPKT--LYVGNLDPSVTEVFLCTLFGQ---IGDVKGCKIIREPGNDPYAFLEF 325
A+ S P T LYVG+L PSVTE L F + + V+ CK + Y + F
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
Query: 326 TCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILR 505
N ++ K ++V W+ + + N +FV +L + +L+
Sbjct: 73 LSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNAVLQ 129
Query: 506 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ F FG I +C+ V + KS+GY FV F ++ A AAIQ +N
Sbjct: 130 DMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 73.7 bits (173), Expect = 9e-14
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 7/158 (4%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 358
KTL+VG+L + E +L T F +V K+IR ++ Y F+EF
Sbjct: 119 KTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 359 XMNKRVVLDKEM--KVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP-FG 526
+ + + E ++NWA+ S G + ++ IFVGDL+P++ +L E FA +
Sbjct: 179 SFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYP 238
Query: 527 EISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ ++V D T +SKGY FV F + + A+ MN
Sbjct: 239 SVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMN 276
Score = 46.8 bits (106), Expect = 1e-05
Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 26/176 (14%)
Frame = +2
Query: 191 TLYVGNLDPSVTE-VFLCTLFGQIGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 358
+++VG+L P V++ V L T G+ VKG K++ + + Y F+ F
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 359 XMNKRVVLDKEMKVNWATSP---------------------GNQPKTD-TSNHHHIFVGD 472
MN ++M+V AT GN +D SN+ IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Query: 473 LSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
L ++ L + F+ FGE+ + +I KG FV F + AE AI +N
Sbjct: 334 LDADVTEEDLMQPFSDFGEVVSVKIP------VGKGCGFVQFANRQSAEEAIGNLN 383
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +2
Query: 164 NMGD-ESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXX 340
+M D ES+ T++VG LD VTE L F G+V KI P F++F
Sbjct: 318 SMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQS 374
Query: 341 XXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSN 448
+N V+ ++++W SP Q ++D+ N
Sbjct: 375 AEEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGN 410
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 71.3 bits (167), Expect = 5e-13
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 9/160 (5%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLF--GQIGDVKGCKIIREPGN---DPYAFLEFTCHXXXXXX 352
KT++VG+L + E +L + F + ++ K+IR N + Y F+EF H
Sbjct: 103 KTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKV 162
Query: 353 XXXMNKRVV--LDKEMKVNWAT-SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAP- 520
N + D+ ++NWA+ S G + + IFVGDL+P++ +L E F+
Sbjct: 163 LQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEK 222
Query: 521 FGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + ++V D T +SKGY FV F + + A+ MN
Sbjct: 223 YPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMN 262
Score = 42.7 bits (96), Expect = 2e-04
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 20/170 (11%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQ-IGDVKGCKIIREPG---NDPYAFLEFTCHXXXXXXXX 358
+++VG+L P V++ L F + VK K++ + + Y F+ F
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 359 XMNKRVVLDKEMKVNWAT---------SPGNQP-------KTDTSNHHHIFVGDLSPEIE 490
MN + M++ AT G P + DT N IFVG L +
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTT-IFVGGLDSSVT 318
Query: 491 TNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
L++ F+ FGEI + +I KG FV FV + +AE A++ +N
Sbjct: 319 DEDLKQPFSEFGEIVSVKIP------VGKGCGFVQFVNRPNAEEALEKLN 362
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
T++VG LD SVT+ L F + G++ KI P F++F +N
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLNG 363
Query: 371 RVVLDKEMKVNWATSPGN-QPKTDTSN 448
V+ + ++++W +P N QP+ N
Sbjct: 364 TVIGKQTVRLSWGRNPANKQPRDKYGN 390
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 3/152 (1%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 367
+++ NLD S+ L F G + CK+ +P Y F+++ +N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 368 KRVVLDKEMKVN-WATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCR 544
++ DK++ V + P + +++V +LS + L + F FG ++C
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 545 IVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
I+RD + KSKG+ FV+F DA A+ A+N
Sbjct: 255 IMRDGEG-KSKGFGFVNFENSDDAARAVDALN 285
Score = 66.1 bits (154), Expect = 2e-11
Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Frame = +2
Query: 170 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXX 343
G++ +YV NL S+++ L +FG+ G C I+R E + + F+ F
Sbjct: 218 GEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDA 277
Query: 344 XXXXXXMNKRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPE 484
+N + DKE V A + D S +++V +L
Sbjct: 278 ARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDES 337
Query: 485 IETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ + LRE FAPFG I++C+++RDP + S+G FV+F +A AI MN
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRAITEMN 388
Score = 64.5 bits (150), Expect = 6e-11
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 361
+LYVG+LD +VT+ L F Q G V ++ R+ Y ++ +
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 362 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 541
+N + + ++V ++ + K+ N IF+ +L I+ L E F+ FG I +C
Sbjct: 106 LNFMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGPILSC 162
Query: 542 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
++ DP +SKGY FV + A+ AI +N
Sbjct: 163 KVAVDPSG-QSKGYGFVQYDTDEAAQGAIDKLN 194
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXX 346
D+S LYV NLD SVT+ L F G + CK++R+P + F+ F+
Sbjct: 322 DKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEAT 381
Query: 347 XXXXXMNKRVVLDKEMKV 400
MN ++++ K + V
Sbjct: 382 RAITEMNGKMIVTKPLYV 399
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/65 (43%), Positives = 43/65 (66%)
Frame = +2
Query: 446 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
N + +F GDL E+ ++L +AFA F + +++RD +T K+KGY FVSF+ AD AA
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 626 IQAMN 640
++ MN
Sbjct: 195 LKEMN 199
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 63.3 bits (147), Expect = 1e-10
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 4/153 (2%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 364
LY GNL +V L + + + +++ R+ G +AF+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 365 NKRVVLDKEMKVNWATSPG-NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 541
+ L + +KVN+A P N+ H +FVG+LS + + L AF G++
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGA 206
Query: 542 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R+V D T +S+GY FV + KA+ E A+++++
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLD 239
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 60.1 bits (139), Expect = 1e-09
Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXX 361
+LYVG+LD +VT+ L F ++ V ++ R+ + Y ++ ++
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 362 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 541
+N + K +++ +++ + ++ N +FV +L ++ L EAF+ G I +C
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 542 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
++ D +S+GY FV F + A+ AI+ +N
Sbjct: 164 KVATDHMG-QSRGYGFVQFDTEDSAKNAIEKLN 195
Score = 60.1 bits (139), Expect = 1e-09
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFTCHXXXXXXXXXMN 367
+YV NL + T+ L T FGQ G + ++R+ + F+ F +N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 368 KRVVLDKEMKVNWATSPGN----------QPKTDTSNHH---HIFVGDLSPEIETNILRE 508
+ DKE V A Q +D N +++V +L + LRE
Sbjct: 287 GKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRE 346
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
FA FG I++C+++RDP SKG FV+F ++A + MN
Sbjct: 347 LFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMN 389
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 170 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXX 343
G++ LYV NLD +VT+ L LF + G + CK++R+P + F+ F+
Sbjct: 322 GNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEA 381
Query: 344 XXXXXXMNKRVVLDKEMKV 400
MN ++V K + V
Sbjct: 382 SRVLNEMNGKMVGGKPLYV 400
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 60.1 bits (139), Expect = 1e-09
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXXMN 367
++V NLD S+ LC +F G V CK+ R+ + Y F++F N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 368 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 547
++ ++ + V S G K+ +++V +L L+ F FGEI++ +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFT--NVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 548 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
++D + KS+ + FV+F K A AI+ MN
Sbjct: 151 MKDGEG-KSRRFGFVNFEKAEAAVTAIEKMN 180
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2
Query: 428 PKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
P S ++FV +L I+ L + F+ FG++ +C++ RD + SKGY FV F
Sbjct: 23 PSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQF 78
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKI-IREPG-NDPYAFLEFTCHXXXXXXXXXMN 367
LYV NLD SV L LF + G + CK+ + G + F+EF+ MN
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 368 KRVVLDKEMKVNWA 409
++V +K + V+ A
Sbjct: 285 GKMVGNKPIYVSLA 298
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 364
L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 365 NKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNILREAFAPFGEIS 535
N V + + VN A G++P+ + I+VG+L ++++ L F+ G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 536 NCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ R+V D +T +S+G+ FV + + AI A++
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALD 269
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 59.3 bits (137), Expect = 2e-09
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Frame = +2
Query: 167 MGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFT 328
+G+ H +LYVG+L P VTE L F V + R YA++ F
Sbjct: 11 LGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFD 70
Query: 329 CHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILRE 508
+N + K M++ W+ + + +++V +L I ++ L
Sbjct: 71 SPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLER 130
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F PFG I +C++V + +SKG+ FV F + A +A A++
Sbjct: 131 MFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSARSALH 172
Score = 41.9 bits (94), Expect = 3e-04
Identities = 44/185 (23%), Positives = 77/185 (41%), Gaps = 15/185 (8%)
Frame = +2
Query: 131 VKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE------ 292
V K I++ A M +YV NL +VT+ L TLF Q G V ++R+
Sbjct: 183 VAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSR 242
Query: 293 ---------PGNDPYAFLEFTCHXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTS 445
P N A +E C + K + D+ ++ N
Sbjct: 243 GFGFVNFCNPENAKKA-MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM 301
Query: 446 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
+++V +LS + LRE F +G+I + +++ + +SKG+ FV F +++ A
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQA 360
Query: 626 IQAMN 640
+ +N
Sbjct: 361 KRYLN 365
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/61 (37%), Positives = 43/61 (70%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG+LSP ++LREAF+ +G + + ++RD T +S+G+ FV++ ++AEAA+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 638 N 640
+
Sbjct: 65 D 65
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND---PYAFLEFTCH 334
+YVGNL P+ T+ L F G+V ++R+ D + F+ ++ H
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSH 54
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 56.4 bits (130), Expect = 2e-08
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Frame = +2
Query: 161 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTC 331
A + S L+VGNL V L LF Q G V+ ++I D + F+ +
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200
Query: 332 HXXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHH---HIFVGDLSPEIETNIL 502
N+ + + + VN A G++P+ + ++VG+L +++ L
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 260
Query: 503 REAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ F+ G++ R+V D +T +S+G+ FV+ + AI A++
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALD 306
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 56.4 bits (130), Expect = 2e-08
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 13/164 (7%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXX 358
+ +Y+GN+ +VT L L + G V+ +++ + + + F
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 359 XMNKRVVLDKEMKVNW-----ATSPG-----NQPKTDTSNHHHIFVGDLSPEIETNILRE 508
+N V +E+KVN A+SP ++ + + ++VG+L+ + +L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F+ G++ + ++ R P T KS G+ FV+F + D EAAI A+N
Sbjct: 196 LFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 185 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXX 355
P +YVGNL +VT+ L LF + G V K+ R PG + F+ F+
Sbjct: 176 PYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAI 235
Query: 356 XXMNKRVVLDKEMKVNWA 409
+N ++ ++++VN A
Sbjct: 236 VALNNSLLEGQKIRVNKA 253
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/61 (36%), Positives = 42/61 (68%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G ++ ++ + LREAF +GE+ + R++ D +T +S+G+ FV+F A +AIQA+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 638 N 640
+
Sbjct: 102 D 102
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+++G LSP + + L++AF+ F ++ R++ + T +S+GY FV+F+ + A +AI AM
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 638 N 640
N
Sbjct: 93 N 93
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +2
Query: 170 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 346
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 347 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 514
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 515 APFGEISNCRIVRDPQTLKSKGYAFVSF 598
A +G + +++RD +T +S+G+ FV F
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +2
Query: 437 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 616
D ++ IF+G L + + + F +GEI++ I+RD T + +G+ F++F +
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 617 EAAIQ 631
+ I+
Sbjct: 74 DKVIE 78
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 125 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 292
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 54.4 bits (125), Expect = 6e-08
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = +2
Query: 170 GDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGN-DPYAFLEFTCHXXXX 346
GD + P +++G L T FG+ G++ I+R+ P F T
Sbjct: 13 GDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSV 72
Query: 347 XXXXXMNKRVVLDKEMKVNWATSP----GNQPKTDTSNHHHIFVGDLSPEIETNILREAF 514
+ V+ K++++ T P GNQ K + IFVG + + + L++ F
Sbjct: 73 VDKVIEDTHVINGKQVEIK-RTIPKGAGGNQSKDIKTKK--IFVGGIPSTVTEDELKDFF 129
Query: 515 APFGEISNCRIVRDPQTLKSKGYAFVSF 598
A +G + +++RD +T +S+G+ FV F
Sbjct: 130 AKYGNVVEHQVIRDHETNRSRGFGFVIF 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +2
Query: 437 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 616
D ++ IF+G L + + + F +GEI++ I+RD T + +G+ F++F +
Sbjct: 14 DGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVV 73
Query: 617 EAAIQ 631
+ I+
Sbjct: 74 DKVIE 78
Score = 31.1 bits (67), Expect = 0.65
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +2
Query: 125 IDVKKVIDRLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 292
+++K+ I + N + K ++VG + +VTE L F + G+V ++IR+
Sbjct: 88 VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 54.0 bits (124), Expect = 8e-08
Identities = 22/61 (36%), Positives = 39/61 (63%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV LS LR+ F+PFG+I R++RD +T + KG+ F++F + DA A++++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 638 N 640
+
Sbjct: 69 D 69
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTCHXXXXXXXXXMNK 370
++VG L T FG+ G++ I+++ P F T +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 371 RVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIV 550
+++ K++++ G+ D IFVG + ++ + +E F FGE+ +I+
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK-IFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
Query: 551 RDPQTLKSKGYAFVSF 598
RD T +S+G+ FV++
Sbjct: 163 RDHSTGRSRGFGFVTY 178
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
IFVG L+ E + + F +GEI++ I++D +T + +G+ FV++ + + IQ
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV S + L++ F+ FG+++N +I+ + +T +S GY +V F K DA++A++AM
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 638 N 640
N
Sbjct: 120 N 120
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 53.6 bits (123), Expect = 1e-07
Identities = 22/61 (36%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV S + L++ F+ FG+++N +I+ + +T +S GY +V F K DA++A++AM
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 638 N 640
N
Sbjct: 139 N 139
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 53.6 bits (123), Expect = 1e-07
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G + + + V +LS + L E F PFG ++ C + D +T S+G+ FVSF
Sbjct: 163 GGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSF 222
Query: 599 VKKADAEAAIQAMN 640
V + DA+ AI +N
Sbjct: 223 VSREDAQRAINKLN 236
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/61 (37%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG LSPE+ L AF+ FG+I +C+I+ + T +S+G+ F++F + + +I+ M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 638 N 640
+
Sbjct: 69 H 69
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
++VG L P VT+ L F + GD+ C+I+ R+ G + F+ F M
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREM 68
Query: 365 NKRVVLDKEMKVNWA 409
+ R D+ + VN A
Sbjct: 69 HGRDFGDRVISVNRA 83
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/74 (41%), Positives = 40/74 (54%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
GN TDT IFVG L+ E + + +R F FGEI ++ D T +SKGY FV+F
Sbjct: 12 GNNNTTDTKLTK-IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTF 70
Query: 599 VKKADAEAAIQAMN 640
+ A A Q MN
Sbjct: 71 KEAEAAMRACQNMN 84
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/61 (37%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G LS ++ L++AF+ FGE++ RI D + +S+G+ FV F ++ DA +A AM
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 638 N 640
+
Sbjct: 103 D 103
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 52.8 bits (121), Expect = 2e-07
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 13/164 (7%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPG--NDPYAFLEFTCHXXXXXXXXX 361
+ L+V NL S++ + LFGQ G V +IIR+ N +AF+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 362 MNKRVVLDKEMKVNWAT--------SPGNQPKTDTSN-HHHIFVGDLSPEIETNILREAF 514
+ V + + V++A SP + P + H ++V +L+ + + LRE F
Sbjct: 155 FDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELF 214
Query: 515 --APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
A F +S + DP+ +S GY FVSF + +AE AI +N
Sbjct: 215 TAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAITKLN 257
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKGY FV
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Query: 593 SFVKKADAEAAIQAMN 640
+ A A+QAMN
Sbjct: 527 KYADVQMANTAVQAMN 542
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
S +P + + ++++G L P +E + L F+ FGEI ++++D T SKGY FV
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFV 526
Query: 593 SFVKKADAEAAIQAMN 640
+ A A+QAMN
Sbjct: 527 KYADVQMANTAVQAMN 542
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 52.4 bits (120), Expect = 2e-07
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 15/164 (9%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR--EPGNDPYAFLEFTCHXXXXXXXXXMN 367
+YV NL S T+ L FG+ G + +++ E + + F+ F +N
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 368 KRVVLDKEMKVNWATSPGNQPK-------------TDTSNHHHIFVGDLSPEIETNILRE 508
DKE V A + D +++V +L P I L+E
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKE 150
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F+PFG +++ +++RDP SKG FV+F +A A+ ++
Sbjct: 151 IFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLS 193
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP 295
D+ LYV NLDPS+++ L +F G V K++R+P
Sbjct: 127 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP 167
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 52.4 bits (120), Expect = 2e-07
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Frame = +2
Query: 179 SHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXX 352
S P L+VG + T FG+ G+V I+ R GN P F T
Sbjct: 63 SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGN-PRGFGFVTFADSAVAE 121
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTD---TSNHHHIFVGDLSPEIETNILREAFAPF 523
V+ D+++ + T P TD S IFVG L P +E + L+ F +
Sbjct: 122 KVLEEDHVIDDRKVDLK-RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVY 180
Query: 524 GEISNCRIVRDPQTLKSKGYAFVSF 598
G+I +I+ D T +S+G+ FV+F
Sbjct: 181 GDIIEHQIMYDHHTGRSRGFGFVTF 205
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+FVG +S E F FGE+ + I+ D T +G+ FV+F A AE ++
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 52.0 bits (119), Expect = 3e-07
Identities = 32/77 (41%), Positives = 40/77 (51%)
Frame = +2
Query: 410 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
TS P DT+ H +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGF 62
Query: 590 VSFVKKADAEAAIQAMN 640
V+F A A+ N
Sbjct: 63 VTFRDSDSATRAVADPN 79
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/58 (41%), Positives = 39/58 (67%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
IFVG +S + LREAF+ +GE+ + +I+ D +T +S+G+AFV+F +A A+Q
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
++VG + S E L F + G+V KII RE G +AF+ FT +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFT-STEEASNAMQL 94
Query: 365 NKRVVLDKEMKVNWATSPGN 424
+ + + + ++VN+AT G+
Sbjct: 95 DGQDLHGRRIRVNYATERGS 114
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 51.6 bits (118), Expect = 4e-07
Identities = 22/61 (36%), Positives = 38/61 (62%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG L+ E+ +IL AF PFG+I + + D K + + FV+F+++ DA AA+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 638 N 640
+
Sbjct: 75 D 75
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
TLYVG L V E L F GD+K K + N + F
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGF 58
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +2
Query: 410 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 590 VSFVKKADAEAAIQAMN 640
V+F + A A+ N
Sbjct: 63 VTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 51.2 bits (117), Expect = 6e-07
Identities = 31/77 (40%), Positives = 41/77 (53%)
Frame = +2
Query: 410 TSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
TS P DT+ + +FVG L+ E T+ +R F FGEI I+ D T KSKGY F
Sbjct: 4 TSYYRSPFGDTT-YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGF 62
Query: 590 VSFVKKADAEAAIQAMN 640
V+F + A A+ N
Sbjct: 63 VTFRESDSATRAVADPN 79
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG LSP + +L+EAF FG+I + +V D ++ S+G+ FV++ A A+QAM
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G LS + LR+AFA FG++ + +++ D +T +S+G+ FV+F + A AAI M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 638 N 640
+
Sbjct: 97 D 97
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 365 NKRVVLDKEMKVNWATSPGNQPK 433
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 40/61 (65%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G LS + LR+AFA FG++ + +++ D +T +S+G+ FV+F + A AAI M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 638 N 640
+
Sbjct: 97 D 97
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
L++G L + L F GDV K+I RE G + F+ F M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 365 NKRVVLDKEMKVNWATSPGNQPK 433
+ + + + ++VN A + P+
Sbjct: 97 DGKELNGRHIRVNPANDRPSAPR 119
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 1e-06
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 15/164 (9%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXXXXXM 364
LYVGNL ++T L +FG+ G V +I+ + D + F+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 365 NKRVVLDKEMKVNWATSPGN------QPKTDTSNH------HHIFVGDLSPEIETNILRE 508
N + + +KVN+ P + K +N H ++ G+L + + L++
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD 237
Query: 509 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
AF + +++ + T +S+G+ F+SF + ++A+ MN
Sbjct: 238 AFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +2
Query: 149 RLR*ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFL 319
++R N P +Y GNL ++T L FG V G K+I R G + F+
Sbjct: 206 KIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFI 265
Query: 320 EFTCHXXXXXXXXXMNKRVVLDKEMKVNWAT 412
F MN V + +++N A+
Sbjct: 266 SFESAENVQSALATMNGVEVEGRALRLNLAS 296
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG LS + + L++AF FGE++ ++ D +T +S+G+ FVSF + A AI+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 638 N 640
+
Sbjct: 97 D 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 364
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 365 NKRVVLDKEMKVNWATSPGNQPKT 436
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG LS + + L++AF FGE++ ++ D +T +S+G+ FVSF + A AI+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 638 N 640
+
Sbjct: 97 D 97
Score = 32.7 bits (71), Expect = 0.21
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXXXXM 364
L+VG L + L F G+V +I RE G + F+ F+C M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 365 NKRVVLDKEMKVNWATSPGNQPKT 436
+ + + ++++VN AT + P++
Sbjct: 97 DGKELNGRQIRVNLATERSSAPRS 120
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 Q 631
+
Sbjct: 199 K 199
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 587 FVSFVKKADAEAAIQ 631
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 Q 631
+
Sbjct: 199 K 199
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 587 FVSFVKKADAEAAIQ 631
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/61 (39%), Positives = 36/61 (59%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L + +T L EAF +GEI +C+ V D + KSKGY F+ + ++ A A+
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 629 Q 631
+
Sbjct: 199 K 199
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
A S Q I+V ++ E++ L F+ FGEI + D T + KG+
Sbjct: 230 AVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Query: 587 FVSFVKKADAEAAIQ 631
+ A+ A++
Sbjct: 290 LFVYKSSESAKRALE 304
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
N P DT+ +FVG L+ E ++ LR+ F +GEI ++ D T +SKGY FV+F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF- 72
Query: 602 KKADAEAAIQA 634
D EAA +A
Sbjct: 73 --RDPEAARRA 81
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 48.8 bits (111), Expect = 3e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
I V +L + L+ F+ FGEI+ ++++D +SKGYAF+ F + DA AI+ M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 638 N 640
+
Sbjct: 102 D 102
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFL---CTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXM 364
+ V NL S +E FL + FG+I +VK K + YAF++FT M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 365 NKRVVLDKEMKVNWATSPGNQ 427
++R+ + + ++ A PG +
Sbjct: 102 DRRMYNGRMIYIDIA-KPGKR 121
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG L L++ F GE++ RI+++PQT KSKG AF+ F A+ A++ +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREP---GNDPYAFLEFTCHXXXXXXXXXM 364
++VG+LD +E L +FG +G+V +I++ P + AFL F
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA--------TVEQ 267
Query: 365 NKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFG--EISN 538
KR V KE+K T + ++ +FVG++ LRE +G + +
Sbjct: 268 AKRAV--KELKSPMINGK-KCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDD 324
Query: 539 CRIVRDPQTLK-SKGYAFVSFVKKADA 616
+V D + ++GYAF+ F ++DA
Sbjct: 325 ITLVEDSNNVNMNRGYAFLEFSSRSDA 351
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +2
Query: 299 NDPYAFLEFTCHXXXXXXXXXMNKRVVL---DKEMKVNWATSPGNQPKTDTSNHHHIFVG 469
N YAFLEF+ + K+ V+ +K KV++ S + + IF+
Sbjct: 337 NRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFID 396
Query: 470 DLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
L P +R+ P+G++ + R+ + + K + FV+F
Sbjct: 397 GLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTF 439
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2
Query: 431 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 610
+ T +FV LS L++AFA FG++ + R++ D + +SKG+ FV++
Sbjct: 27 RCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIE 86
Query: 611 DAEAAIQAMN 640
DAE A MN
Sbjct: 87 DAEKAKAEMN 96
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G+ FV+F + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 632 AMN 640
MN
Sbjct: 68 GMN 70
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 197 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 367
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 368 KRVVLDKEMKVNWATSPGN 424
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ + L AFA +G++ + +I+ D +T +S+G+ FV+F + + AI+
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 632 AMN 640
MN
Sbjct: 68 GMN 70
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 197 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 367
+VG L + + L T F Q GDV KII RE G + F+ F MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 368 KRVVLDKEMKVNWATSPGN 424
+ + + + VN A S G+
Sbjct: 71 GQDLDGRSITVNEAQSRGS 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 47.2 bits (107), Expect = 9e-06
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 9/167 (5%)
Frame = +2
Query: 167 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE-PGNDPYAFLEFTC---H 334
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 335 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDT-----SNHHHIFVGDLSPEIETNI 499
NK+ + + + G + D + H +FVG L +
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 500 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
++ F+ +G I + +I+R SKG F+ + K A AA++A+N
Sbjct: 125 VQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAMEALN 170
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +2
Query: 401 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 580
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 322 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 381
Query: 581 YAFVSFVKKADAEAAIQAMN 640
+ F+S+ +A A+ AI MN
Sbjct: 382 FGFISYDSQAAAQNAINTMN 401
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAFAPFGEISNCRIV---RDPQTLKSKGYAFVSFVKKADAEAA 625
+++VG+LSP+++ N L F FG I++ +I+ D + + + FVSF+ +AD +AA
Sbjct: 180 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQAA 239
Query: 626 IQAM 637
M
Sbjct: 240 KDEM 243
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +2
Query: 173 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP-------YAFLEF 325
D+ P+T LYVGNL P V E FL FG+ G + KI+ P D F+ F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIM-WPRTDEEKRRQRNCGFVSF 230
Query: 326 TCHXXXXXXXXXMNKRVVLDKEMKVNW 406
M +V + E+K+ W
Sbjct: 231 MNRADGQAAKDEMQGIIVYEYELKIGW 257
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +2
Query: 398 VNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSK 577
V + S + ++T H + V L + + +LR F+ I + R+VRD T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 578 GYAFVSFVKKADAEAAIQAMN 640
G+AFV F DA A++A N
Sbjct: 500 GFAFVHFYSVEDATKALEATN 520
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
NQ + + V LS + L + A +G + + R++R+ + S+G+AF+ F
Sbjct: 288 NQDHFSATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDF 346
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S+ +F+G +S + + N+LRE F+ FGE+ ++R+ T + +G+ FV+F A +
Sbjct: 3 SDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDR 62
Query: 623 AIQ 631
+Q
Sbjct: 63 VLQ 65
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S+ +IFV L + L+ AF +GEI+ C +V D T ++KG+ FV F + A A
Sbjct: 160 SSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARA 219
Query: 623 AIQ 631
A++
Sbjct: 220 ALK 222
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/61 (37%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
I V + E + + AF FGEI N + D ++ KGYA + + KK +A++AI AM
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 638 N 640
N
Sbjct: 157 N 157
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/71 (39%), Positives = 40/71 (56%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
N P DT+ +FVG L+ E ++ LR F +G+I ++ D T +SKGY FV+F
Sbjct: 15 NSPFGDTT-FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF- 72
Query: 602 KKADAEAAIQA 634
D EAA +A
Sbjct: 73 --RDPEAARRA 81
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 46.8 bits (106), Expect = 1e-05
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 5/163 (3%)
Frame = +2
Query: 167 MGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTC---H 334
M +E K L+VG + +TE+ L TLF + V II+E P TC
Sbjct: 6 MENEERVK-LFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTRE 64
Query: 335 XXXXXXXXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAF 514
NK+ + + + G + + H +FVG L + ++ F
Sbjct: 65 DADKVINSFHNKKTLPGASSPLQVKYADGELERLE----HKLFVGMLPKNVSETEVQSLF 120
Query: 515 APFGEISNCRIVRDP-QTLKSKGYAFVSFVKKADAEAAIQAMN 640
+ +G I + +I+R QT SKG F+ + K A AA++A+N
Sbjct: 121 SEYGTIKDLQILRGSLQT--SKGCLFLKYESKEQAVAAMEALN 161
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/80 (30%), Positives = 42/80 (52%)
Frame = +2
Query: 401 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 580
N TS + +T+ ++F+ ++ E E L F PFG++ + ++ D T SK
Sbjct: 313 NNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKC 372
Query: 581 YAFVSFVKKADAEAAIQAMN 640
+ F+S+ +A A+ AI MN
Sbjct: 373 FGFISYDSQAAAQNAINTMN 392
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
++ + + V +LS + L E F PFG ++ + D +T S+G+ FV+FV + DA+
Sbjct: 210 NDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 269
Query: 623 AIQAMN 640
AI +N
Sbjct: 270 AINKLN 275
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L + + + L +AF +GEI +C+ V D + +SKGY F+ F ++ A A+
Sbjct: 127 HRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
Query: 629 Q 631
+
Sbjct: 187 K 187
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
I+V ++S +I+ L E F+ FGEI + D T + KG+A + A+ A++
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +2
Query: 446 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
N + FVG L+ + + F FGE+ + +I+ D +T +SKG+ FV+F + A
Sbjct: 42 NEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTA 101
Query: 626 IQAMN 640
I MN
Sbjct: 102 IDRMN 106
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +2
Query: 416 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
P N P + +FV L+ E + ++ F +G I +V D T K KGYAF+
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 596 FVKKADAEAA 625
++ D +AA
Sbjct: 186 YMHTRDMKAA 195
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 46.0 bits (104), Expect = 2e-05
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFTCHXXXXXXXXXM 364
+T+YV +LD VTE L LF G V C+I +P + +AF+EFT
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLS 232
Query: 365 NKRVVL--DKEMKVNWATSPGNQ---PKTDTSNH---HHIFVGDLSPEIETNILREAFAP 520
+ K + A +P N P+T+ I+ ++ ++ + ++ F
Sbjct: 233 GTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFES 292
Query: 521 F-GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F GE+ R++ D Q S AFV FV AE+AI A+N
Sbjct: 293 FCGEVYRLRLLGDYQ--HSTRIAFVEFVM---AESAIAALN 328
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Frame = +2
Query: 182 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 358
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 359 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 538
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 539 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R +T + + FV F AEAA++A+N
Sbjct: 282 IR-----ETPHKRHHKFVEFYDVRGAEAALKALN 310
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 371 RVVLDKEMKVNWATSPG 421
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 46.0 bits (104), Expect = 2e-05
Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 1/154 (0%)
Frame = +2
Query: 182 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXX 358
HP +TL+V N++ +V + L LF Q GD++ + + + + +
Sbjct: 165 HPSRTLFVRNINSNVEDSELTALFEQYGDIR--TLYTTCKHRGFVMISYYDIRSARMAMR 222
Query: 359 XMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISN 538
+ + + +++ ++++ P + P N + V +L P I + L F GEI
Sbjct: 223 SLQNKPLRRRKLDIHFSI-PKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKE 281
Query: 539 CRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R +T + + FV F AEAA++A+N
Sbjct: 282 IR-----ETPHKRHHKFVEFYDVRGAEAALKALN 310
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
TL V NLDPS++ L +FG G++K +I P + F+EF +N+
Sbjct: 254 TLVVFNLDPSISNDDLHGIFGAHGEIK--EIRETPHKRHHKFVEFYDVRGAEAALKALNR 311
Query: 371 RVVLDKEMKVNWATSPG 421
+ K +KV + PG
Sbjct: 312 CEIAGKRIKVE-PSRPG 327
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/72 (33%), Positives = 40/72 (55%)
Frame = +2
Query: 425 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 604
+P+ + S + +FV LS + LR AFA FGE+++ ++V D + SKG+ FV +
Sbjct: 49 RPQAEPSTN--LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYAT 106
Query: 605 KADAEAAIQAMN 640
D+ I M+
Sbjct: 107 LEDSAKGIAGMD 118
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++V LS + L FA G++++C +V +P+T S+G+AFV+ DAE I+ +
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 638 N 640
N
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++V LS + L FA G++++C +V +P+T S+G+AFV+ DAE I+ +
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 638 N 640
N
Sbjct: 133 N 133
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G L ++ LR+ GEI R+++D + SKGYAFV+F K A+ AI+ +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 638 N 640
+
Sbjct: 178 H 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Frame = +2
Query: 182 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXX 352
H +++G L V E L L +IG++ +++ R+ G+ YAF+ F
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGE- 529
++ + K ++ + ++T N +F+G++ + R+ G
Sbjct: 174 IEELHSKEFKGKTIRCS---------LSETKN--RLFIGNIPKNWTEDEFRKVIEDVGPG 222
Query: 530 ISNCRIVRDP-QTLKSKGYAFVSFVKKADAEAAIQAM 637
+ N +++DP T +++G+AFV + A A+ + Q M
Sbjct: 223 VENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKM 259
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 334
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 335 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 511
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F FG + + ++RD + +S+G FV + K A AAI +N
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.8 bits (101), Expect = 5e-05
Identities = 37/163 (22%), Positives = 71/163 (43%), Gaps = 4/163 (2%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY---AFLEFTCH 334
++ D S L+VG++ + TE + F Q G+V +I++ F+++
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171
Query: 335 XXXXXXXXXMNKRVVLDKEM-KVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREA 511
++ ++ L V + G + + T +FVG L+ + + E
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK-LFVGSLNKQATEKEVEEI 230
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
F FG + + ++RD + +S+G FV + K A AAI +N
Sbjct: 231 FLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLN 272
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+ LS LR AF FGE+ +I+ D + +SKGYAF+ + + A A++ M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 638 N 640
N
Sbjct: 344 N 344
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 44.4 bits (100), Expect = 7e-05
Identities = 33/151 (21%), Positives = 67/151 (44%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 367
+ L+V N+D S+ + L LF Q GDV+ + N + + + ++
Sbjct: 211 RILFVRNVDSSIEDCELGVLFKQFGDVRALHTAGK--NRGFIMVSYYDIRAAQKAARALH 268
Query: 368 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 547
R++ +++ + ++ P PK + S+ ++V +L I L F+ +GEI R
Sbjct: 269 GRLLRGRKLDIRYSI-PKENPK-ENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVR- 325
Query: 548 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+T+ ++ F A+ A+Q +N
Sbjct: 326 ----RTMHENSQVYIEFFDVRKAKVALQGLN 352
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 44.4 bits (100), Expect = 7e-05
Identities = 25/73 (34%), Positives = 36/73 (49%)
Frame = +2
Query: 401 NWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKG 580
N AT G T + IFVG L E + LR+ F FG I + I +DP+ +G
Sbjct: 223 NPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRG 282
Query: 581 YAFVSFVKKADAE 619
+ FV+F + A+
Sbjct: 283 FGFVTFAENGVAD 295
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/50 (28%), Positives = 35/50 (70%)
Frame = +2
Query: 482 EIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+I+++ L++ + FG++ +C +++D T +S+G+ +V+F DA+ A++
Sbjct: 13 DIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +2
Query: 392 MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLK 571
++V AT P + + IFV + + + R F +GEI++ + +D + +
Sbjct: 72 LEVKVAT-PKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 572 SKGYAFVSF 598
+G F++F
Sbjct: 131 HRGIGFITF 139
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +2
Query: 431 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 610
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G+ F++F +
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 611 DAEAAIQAMN 640
A+ AI+ M+
Sbjct: 65 GADDAIKHMH 74
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 365 NKRVVLDKEMKVNWA 409
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +2
Query: 431 KTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 610
+ D + IFVG LS ++ L F +G+I+ C+I+ T + +G+ F++F +
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 611 DAEAAIQAMN 640
A+ AI+ M+
Sbjct: 65 GADDAIKHMH 74
Score = 29.1 bits (62), Expect = 2.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXM 364
++VG L VTE L + F + G + C+I+ R+ G + F+ FT M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 365 NKRVVLDKEMKVNWA 409
+ R + +K + VN A
Sbjct: 74 HGRELGNKVISVNKA 88
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 413 SPGNQPKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
SP +D N + ++V LS + L + FA G++++ +V DP T +S+G+ F
Sbjct: 31 SPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGF 90
Query: 590 VSFVKKADAEAAIQAMN 640
+S DA I++++
Sbjct: 91 ISMKSVGDANRCIRSLD 107
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +2
Query: 413 SPGNQPKTDTSNH-HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
SP +D N + ++V LS + L + FA G++++ +V DP T +S+G+ F
Sbjct: 61 SPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGF 120
Query: 590 VSFVKKADAEAAIQAMN 640
+S DA I++++
Sbjct: 121 ISMKSVGDANRCIRSLD 137
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S+ +FVG +S E + + LRE F +GE+S ++RD T + +G+ FV F + +
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 623 AIQ 631
+Q
Sbjct: 63 VLQ 65
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ F+G L+ LR+AF +G + ++V D + +S+G+ F++F +K + AI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 632 AMN 640
AMN
Sbjct: 67 AMN 69
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 43.6 bits (98), Expect = 1e-04
Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT----CHX 337
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF H
Sbjct: 136 EDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHE 195
Query: 338 XXXXXXXXMN---KRVVLDKE--MKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNIL 502
+ RV+ K + VN P ++ + + I+ ++ ++ +
Sbjct: 196 ALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCT-RTIYCTNIDKKVSQADV 254
Query: 503 REAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R F + GE++ R++ D L S AFV F A A++A+ A+N
Sbjct: 255 RNFFESACGEVTRLRLLGD--QLHSTRIAFVEF---ALADSALSALN 296
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
++ + + S ++V D+ + L F+ G++ +CRI DP ++ +AFV F
Sbjct: 131 SKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFA 188
Query: 602 KKADAEAAI 628
A A+
Sbjct: 189 DDQGAHEAL 197
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S++ +F+G +S + L+E F+ FGE+ I++D T +++G+ FV F A AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 623 AI 628
I
Sbjct: 63 VI 64
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S++ +F+G +S + L+E F+ FGE+ I++D T +++G+ FV F A AE
Sbjct: 3 SDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEI 62
Query: 623 AI 628
I
Sbjct: 63 VI 64
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/47 (40%), Positives = 32/47 (68%)
Frame = +2
Query: 500 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
LR+ FAPF R+++D QT + KG+ F++F + DA+ A++A+N
Sbjct: 87 LRQLFAPFA-----RLIKDQQTQRPKGFGFITFESEDDAQKALKALN 128
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +2
Query: 446 NHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
N +++VG + ++ L F+ +GEI + ++RD T KSKG+AF+++ + A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 626 IQAMN 640
+ +N
Sbjct: 94 VDNLN 98
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L E L F +GEI C +V D T K+KG+ FV F + A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 629 Q 631
+
Sbjct: 163 K 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2
Query: 449 HHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
H IFV L E L F +GEI C +V D T K+KG+ FV F + A+ A+
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 629 Q 631
+
Sbjct: 163 K 163
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+IFV + L+ AF +GEI C +V D T + KGY FV F + A A++
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG+LS +++ L + F G + ++ D T +S+G+ FV+ A+ EAA Q
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 638 N 640
N
Sbjct: 161 N 161
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/74 (24%), Positives = 40/74 (54%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG+ FV+
Sbjct: 238 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 297
Query: 599 VKKADAEAAIQAMN 640
+ + AI ++N
Sbjct: 298 SSSQEVQKAINSLN 311
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG+LS +++ L + F G + ++ D T +S+G+ FV+ A+ EAA Q
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 638 N 640
N
Sbjct: 161 N 161
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/74 (24%), Positives = 40/74 (54%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G+ + + + + ++VG+LS ++ L F G++ R++ D + +SKG+ FV+
Sbjct: 246 GSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTL 305
Query: 599 VKKADAEAAIQAMN 640
+ + AI ++N
Sbjct: 306 SSSQEVQKAINSLN 319
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 632 AMN 640
MN
Sbjct: 66 EMN 68
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 632 AMN 640
MN
Sbjct: 66 EMN 68
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 197 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 367
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 368 KRVVLDKEMKVNWATSPGN 424
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 632 AMN 640
MN
Sbjct: 66 EMN 68
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 197 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 367
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 368 KRVVLDKEMKVNWATSPGN 424
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/63 (30%), Positives = 36/63 (57%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ FVG L+ L+ F+ FG++ + +I+ D ++ +S+G+ FV+F + AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 632 AMN 640
MN
Sbjct: 66 EMN 68
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +2
Query: 197 YVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGND-PYAFLEFTCHXXXXXXXXXMN 367
+VG L + + L F Q GDV KII RE G + F+ F MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 368 KRVVLDKEMKVNWATSPGN 424
+ + + + VN A S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +2
Query: 443 SNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEA 622
S+H + V ++ + LRE F FG + + I RD + + +G+AFV FV DA
Sbjct: 44 SSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGE 103
Query: 623 AIQAMN 640
A ++MN
Sbjct: 104 AQRSMN 109
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/78 (24%), Positives = 43/78 (55%)
Frame = +2
Query: 407 ATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYA 586
+++PG + ++V +L + + + F+ FG+++ +++D T +S+G A
Sbjct: 42 SSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVA 101
Query: 587 FVSFVKKADAEAAIQAMN 640
FV +V + DA A ++M+
Sbjct: 102 FVLYVSREDAAKAARSMD 119
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE 292
TLYV NLD S+T + TLF G V ++++
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKD 91
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ E +++ F FGEI ++ D + +SKGY FV+F +AEAA A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTF---REAEAARSA 70
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG+L + LR+ F FG + ++ DP+T + KG+ F+ FV+ ++AA A+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 638 N 640
N
Sbjct: 327 N 327
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 41.9 bits (94), Expect = 3e-04
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
+P Q S+ +F+G +S + + L+E F +G++ I+RD T +++G+ F+
Sbjct: 2 NPEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
Query: 593 SFVKKADAEAAI 628
F + AE I
Sbjct: 62 VFADPSVAERVI 73
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 416 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
P K + +FVG LS + LRE + +G I N R+VR T S+GY FV
Sbjct: 52 PSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVE 111
Query: 596 F 598
+
Sbjct: 112 Y 112
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ E LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ E LR F FG+I ++ D + +SKGY FV+F D EAA +A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTF---CDPEAAQKA 64
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+F+G LS L EAF+ G++ +IV D + +SKG+ FV+F +A+ A+
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 638 N 640
N
Sbjct: 96 N 96
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFV 592
S + P + + ++V LS + LR+ F FG + + +V D + KG+AF+
Sbjct: 64 SSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFL 123
Query: 593 SFVKKADAEAAIQAMN 640
+ + +A AIQ M+
Sbjct: 124 RYETEEEAMKAIQGMH 139
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 328
++S +T+YV ++D SVTE L LF G V C+I +P + +AF+EF+
Sbjct: 123 EDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFS 175
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Frame = +2
Query: 365 NKRVVLDKEMKVNWATS-----PGNQPKT--DTSNHHHIFVGDLSPEIETNILREAFAPF 523
NK+V +++ + N+ PG K + S ++V D+ + L F+
Sbjct: 92 NKKVAINRRRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSC 151
Query: 524 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
G++ +CRI DP ++ +AFV F A +A+
Sbjct: 152 GQVVDCRICGDPNSVLR--FAFVEFSDDQGARSAL 184
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
+FVG L+ + + + F +G+I I+ D T +SKGY FV+F DA+AA +A
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF---KDAKAATRA 74
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 41.1 bits (92), Expect = 6e-04
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
Frame = +2
Query: 182 HPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEFTCHXXXXXX 352
H +Y+G + TE L G IG+V +I+RE + YAF+ F
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPE-IETNILREAFAPFGE 529
+N K +K + T H +F+G++ +E++I + A
Sbjct: 150 IDTLNNTDFRGKRIKC-----------STTQAKHRLFLGNVPRNWMESDIKKAANRIGPG 198
Query: 530 ISNCRIVRDPQTL-KSKGYAFVSFVKKADAEAAIQAMN 640
+ + ++PQ + +++G+AF+ + A AE + Q M+
Sbjct: 199 VQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSKQKMS 236
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+F+ L+ + T LR F+ +G++ ++ D T KSKGY FV+F+ A A++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+F+ L+ + T LR F+ +G++ ++ D T KSKGY FV+F+ A A++
Sbjct: 77 LFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV +S L +AF+ +G++ ++ D + KG+A+V+F K +AE A+ +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 638 N 640
N
Sbjct: 83 N 83
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 434 TDTSNHH----HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
+ T+NH IFVG+L+ + LR F FG++ + +V + +SKGY F++F
Sbjct: 2 SQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFR 61
Query: 602 KKADAEAAIQ 631
A+Q
Sbjct: 62 DYVSTVRALQ 71
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/63 (25%), Positives = 38/63 (60%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+ ++VG+LS ++ L F+ G++ R++ D + +SKG+ FV++ + + AI+
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 632 AMN 640
+++
Sbjct: 264 SLD 266
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG+L +++ L + F G + ++ D T +S+G+ FV+ ++ EAA Q
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 638 N 640
N
Sbjct: 153 N 153
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
+F+G +S E + LR+ F FGE+ I++D T +++G+ FV F AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
+F+G +S E + LR+ F FGE+ I++D T +++G+ FV F AE +
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVV 64
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/151 (20%), Positives = 61/151 (40%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 367
+TL VGN+ +V + L LF Q GD++ + N + + + +
Sbjct: 217 RTLLVGNISSNVEDYELKVLFEQFGDIQALHTACK--NRGFIMVSYCDIRAAQNAARALQ 274
Query: 368 KRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRI 547
+++ ++ + ++ S N + DTS + V +L I L +GE+ R
Sbjct: 275 NKLLRGTKLDIRYSISKENPSQKDTSK-GALLVNNLDSSISNQELNRLVKSYGEVKEIR- 332
Query: 548 VRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
+T+ ++ F A AA+ +N
Sbjct: 333 ----RTMHDNSQIYIEFFDVRAAAAALGGLN 359
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +2
Query: 362 MNKRVVLDKEMKVNWATSPGNQPKTDT---SNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+ K+ +K +K + GN D+ + HI V DL P ++ F FG I
Sbjct: 517 VEKKYAYNKNIKADAGADTGNGNSQDSQAITEDAHIRVKDLPPNATVALVESVFKQFGPI 576
Query: 533 SNCRI-VRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
RI V +P + YAFV F + A+ AIQA
Sbjct: 577 KKGRIRVINPAN-SNYWYAFVEFEEADAAKRAIQA 610
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 39.1 bits (87), Expect = 0.002
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIR-EPGN-DPYAFLEFTCHXXXXXXXXX 361
KTL+ GNL + + F + G+V ++ + G+ Y +EF
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFAS-PEEAQKALE 442
Query: 362 MNKRVVLDKEMKVNWATSPG----NQP--KTDTSNHHHIFVGDLSPEI-ETNI---LREA 511
MN +++L ++++++ A G + P K + S I+V S + E I LR
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 512 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 613
F+ GE++ + D +T S+G+A++ D
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD 536
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Frame = +2
Query: 182 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGC-KIIREPGNDPYAFLEF-TCHXXXXXX 352
HP +TL+V N++ SV + L LF G+++ + G ++ + H
Sbjct: 182 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRAL 241
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+ ++ LD + P P N + + ++ + + L + F +GEI
Sbjct: 242 QNTLLRKRTLDIHFSI-----PKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 296
Query: 533 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R +T + + F+ + DAE A++A+N
Sbjct: 297 REIR-----ETPNRRFHRFIEYYDVRDAETALKALN 327
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 39.1 bits (87), Expect = 0.002
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Frame = +2
Query: 182 HP-KTLYVGNLDPSVTEVFLCTLFGQIGDVKGC-KIIREPGNDPYAFLEF-TCHXXXXXX 352
HP +TL+V N++ SV + L LF G+++ + G ++ + H
Sbjct: 195 HPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRAL 254
Query: 353 XXXMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEI 532
+ ++ LD + P P N + + ++ + + L + F +GEI
Sbjct: 255 QNTLLRKRTLDIHFSI-----PKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEI 309
Query: 533 SNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
R +T + + F+ + DAE A++A+N
Sbjct: 310 REIR-----ETPNRRFHRFIEYYDVRDAETALKALN 340
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 413 SPGNQPKTDTSNHHHI-FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAF 589
S G+ P+ + ++ FV L+P E L F+ FG + + ++RD +T S YAF
Sbjct: 229 SIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAF 288
Query: 590 VSFVKKADAEAAIQAMN 640
+ F K E A M+
Sbjct: 289 IEFENKESCEQAYFKMD 305
Score = 31.1 bits (67), Expect = 0.65
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIRE--PGND-PYAFLEFTCHXXXXXXXXXM 364
L+V L+P + L T+F + G V +IR+ G+ YAF+EF M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 365 NKRVVLDKEMKVNWATS 415
+ ++ D+ + V+++ S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 328
+T+YV ++D VTE L LF G V C+I +P + +AF+EFT
Sbjct: 150 RTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFT 197
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++V D+ ++ L F FG++ +CRI DP ++ +AF+ F + A A+
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLR--FAFIEFTDEVGARTAL 206
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/57 (28%), Positives = 33/57 (57%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
+F+G +S + + LR+ F+ +G++ I+RD T +++G+ F+ F +E I
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
I+VG L L F FGEI + +V D +T +S+GY FV+F DAE+A +A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTF---KDAESATRA 70
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAFAPFGEISNCRIV---RDPQTLKSKGYAFVSFVKKADAEAA 625
+++V +LS +++ N L F FG I++ +I+ + + + + FV+F+ +AD EAA
Sbjct: 188 NLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADGEAA 247
Query: 626 IQAM 637
+ M
Sbjct: 248 KEKM 251
Score = 33.9 bits (74), Expect = 0.092
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Frame = +2
Query: 173 DESHPKT--LYVGNLDPSVTEVFLCTLFGQIGDVKGCKII-----REPGNDPY-AFLEFT 328
D+ P+T LYV NL V E FL FG+ G + KI+ E + + F+ F
Sbjct: 180 DDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFM 239
Query: 329 CHXXXXXXXXXMNKRVVLDKEMKVNW 406
M +V + E+K+ W
Sbjct: 240 NRADGEAAKEKMQGIIVYEYELKIGW 265
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAF-APFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++FV +L+ E L+E F A G + + ++ +S GY FVSF K AEAA+
Sbjct: 190 NLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAAL 248
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 458 IFVGDLSPEIETNI-LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
IFVG L P T + +RE FG + +V+D +T SKGYAF + + + A A
Sbjct: 377 IFVGGL-PYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 635 MN 640
+N
Sbjct: 436 LN 437
Score = 31.9 bits (69), Expect = 0.37
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Frame = +2
Query: 185 PKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDP-YAFLEFTCHXXXXXXX 355
P ++VG L TEV + L G ++G ++ RE GN YAF +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
Query: 356 XXMNKRVVLDKEMKVNWATSPGNQPKTD 439
+N + DK + V A QPK +
Sbjct: 434 AALNGIKMGDKTLTVRRAIQGAIQPKPE 461
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/74 (27%), Positives = 40/74 (54%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G D S+ + + V +++ + L FA +G++ + I RD +T S+G+AFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 599 VKKADAEAAIQAMN 640
K +A A++ ++
Sbjct: 65 KYKDEAHKAVERLD 78
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/74 (27%), Positives = 40/74 (54%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G D S+ + + V +++ + L FA +G++ + I RD +T S+G+AFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 599 VKKADAEAAIQAMN 640
K +A A++ ++
Sbjct: 65 KYKDEAHKAVERLD 78
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 638 N 640
N
Sbjct: 421 N 421
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 638 N 640
N
Sbjct: 421 N 421
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
IFVG L + +RE FG + +V+D +T SKGYAF + + + A A+
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 638 N 640
N
Sbjct: 421 N 421
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 328
D+ +T+YV ++D VTE L +F G V C++ +P + +AF+EFT
Sbjct: 164 DDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFT 216
Score = 35.1 bits (77), Expect = 0.040
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++V D+ ++ L F G++ +CR+ DP ++ +AF+ F + A AA+
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLR--FAFIEFTNEEGARAAL 225
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +2
Query: 425 QPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 604
+P D S+ IFV ++ + L F FGE+ IV DP T + G A++ F +
Sbjct: 508 RPLEDASSRT-IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTR 566
Query: 605 KADAEAAI 628
K AE A+
Sbjct: 567 KEAAENAL 574
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++VG+L + + LR+ F FG + ++ RD +T KG+ FV F + DA A+
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
+ V LS + L+E F FGE+ + I D +G+ +V F +ADAE A
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKA 155
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAA 625
+ V LS + L+E F FGE+ + I D +G+ +V F +ADAE A
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKA 155
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+++G + + F+ FG + R+ R+ +T KSK + F+ F AE A AM
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 638 N 640
N
Sbjct: 122 N 122
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 434 TDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAD 613
+ +S +FVG++ + LRE G + + R+V D +T K KGY F + D
Sbjct: 3 SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEY---KD 59
Query: 614 AEAAIQA 634
E A+ A
Sbjct: 60 EETALSA 66
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+ V +++ E LR+ F+PFG+I + R+ + + GYAFV FV K +A A +A+
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKKAL 729
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 437 DTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADA 616
D + +FV +L L E F+ FG+IS +V D +T +S+G A++ ++ A
Sbjct: 256 DVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECA 315
Query: 617 EAAIQAMN 640
A++ ++
Sbjct: 316 ARAMEELD 323
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+ V L I L EAF+ G + C +V + + + +G+AFV F + D AI+
Sbjct: 22 VCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELK 81
Query: 638 N 640
N
Sbjct: 82 N 82
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE-AAIQA 634
+F+ +L ++ +++ F FGE+ + +V T + +G AFV F K ADA AAI A
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKF-KTADASVAAISA 621
Score = 31.1 bits (67), Expect = 0.65
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Frame = +2
Query: 389 EMKVN--WATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQ 562
E+K N WA G + + + + +L + + + ++ F+ G + + I ++ +
Sbjct: 310 EVKGNLIWARQLGGEGSK--AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFE 367
Query: 563 TLKSKGYAFVSFVKKADAEAAIQAMN 640
T KG+AFV F K DA AI+ N
Sbjct: 368 TGLPKGFAFVKFTCKKDAANAIKKFN 393
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 170 GDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP---YAFLEF 325
G+E P T+ V L S+T L F ++G V+ C ++ G+D +AF++F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKF 68
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+YVGNLDP VTE L F G V+ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPG--YAFLDF 45
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 416 PGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVS 595
P + P N + V +L+P + L F +GEI R +T + + FV
Sbjct: 210 PKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIR-----ETPNKRHHKFVE 264
Query: 596 FVKKADAEAAIQAMN 640
F A+AA++A+N
Sbjct: 265 FFDVRSADAALKALN 279
Score = 31.5 bits (68), Expect = 0.49
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
TL V NL PSV+ L +FG G++K +I P + F+EF +N+
Sbjct: 223 TLVVFNLAPSVSNRDLENIFGVYGEIK--EIRETPNKRHHKFVEFFDVRSADAALKALNR 280
Query: 371 RVVLDKEMKVNWATSPG 421
+ K +K+ + G
Sbjct: 281 TEIAGKRIKLEHSRPGG 297
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+YVGNLDP VTE L F G ++ + R P YAFL+F
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPG--YAFLDF 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/44 (47%), Positives = 25/44 (56%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+YVGNLDP VTE L F G ++ + R P YAFLEF
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPG--YAFLEF 45
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/58 (24%), Positives = 31/58 (53%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+++G++ + +L + G + + I RD +T K KG+AF + + A+ A++
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 440 TSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAE 619
TS IFVG LS + F FG ++ ++ D T + +G+ FV++ + E
Sbjct: 116 TSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE 175
Query: 620 AAIQA 634
+Q+
Sbjct: 176 VVMQS 180
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 35.5 bits (78), Expect = 0.030
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
I+V L T L F FGEI ++V D T +SKG+ FV+F + A A +
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 638 N 640
N
Sbjct: 71 N 71
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 35.5 bits (78), Expect = 0.030
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 7/171 (4%)
Frame = +2
Query: 137 KVIDRLR*ANMGDESHP----KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPG 298
K++ ++ DE+ P + + V NL P + F + V +++ E
Sbjct: 137 KLLRQVHTVQSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGK 196
Query: 299 NDPYAFLEFTCHXXXXXXXXXMNKRVVLD-KEMKVNWATSPGNQPKTDTSNHHHIFVGDL 475
+ Y F+EF N + + K + + SPG + + +FV +L
Sbjct: 197 HVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKT--LFVANL 254
Query: 476 SPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
I+ + + F GE+ + R++ + Q K G+ FV F +AE A+
Sbjct: 255 RDSIQISDIINFFKDVGEVVHVRLIVNSQG-KHAGWGFVEFASANEAEKAL 304
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 34.7 bits (76), Expect = 0.053
Identities = 19/46 (41%), Positives = 24/46 (52%)
Frame = +2
Query: 461 FVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
F LS + N LRE F+ GEI N + D T SKG A++ F
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 34.3 bits (75), Expect = 0.070
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 419 GNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
G D + ++VG L+ I +R+ F GEI + RI+ D K AFV++
Sbjct: 217 GTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTY 270
Query: 599 VKKADAEAAIQAMN 640
+ AE A Q ++
Sbjct: 271 TSREGAEKAAQELS 284
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 173 DESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXX 352
D+ KTLYVG L+ + E + F G+++ +I+ + AF+ +T
Sbjct: 223 DDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKA---CAFVTYTSREGAEKA 279
Query: 353 XXXMNKRVVLD-KEMKVNWATSPGNQ 427
++ R+V++ + +K+ W +Q
Sbjct: 280 AQELSNRLVINGQRLKLTWGRPKPDQ 305
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 33.9 bits (74), Expect = 0.092
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGND-PYAFLEFT 328
+T+YV ++D VTE L +LF G V C++ + + +AF+EFT
Sbjct: 137 RTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFT 184
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 33.9 bits (74), Expect = 0.092
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++V ++ + L + F PFG + + + R+PQT +S+G +V+ A+ AI ++
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 638 N 640
+
Sbjct: 170 D 170
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV +LSP+ + + + + F GE+ + R++ + + K GY FV F + + A++
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEG-KHVGYGFVEFASADETKKALENK 304
Query: 638 N 640
N
Sbjct: 305 N 305
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FV +LSP + + + + F E+ R++ + + + G FV F +A+ A+Q M
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRG-EHVGCGFVEFASVNEAQKALQKM 549
Query: 638 N 640
N
Sbjct: 550 N 550
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
N+ K + +FVG + + + L F F + I++D T S+G F+
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCP 67
Query: 602 KKADAEAAIQA 634
+ +A+ + A
Sbjct: 68 SREEADKLVNA 78
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +2
Query: 422 NQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 601
N+ K + +FVG + + + L F F + I++D T S+G F+
Sbjct: 8 NREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCP 67
Query: 602 KKADAEAAIQA 634
+ +A+ + A
Sbjct: 68 SREEADKLVNA 78
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++V +S +R+ F +G ++ + +D T + Y F+ + K + AAI A+
Sbjct: 112 LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAAL 171
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++V L+ + + E F+ +G I + + D + +GYAFV F K A AAI+A+
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKI-CRGYAFVQFSCKEMALAAIKAL 267
Query: 638 N 640
N
Sbjct: 268 N 268
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +2
Query: 452 HHIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
++++VG L+PE + L E F +G+I + S+G+AF+ + +A AA +
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYGDIDRITV------YSSRGFAFIYYRHVEEAVAAKE 71
Query: 632 AM 637
A+
Sbjct: 72 AL 73
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
L+VG+L P TE L LFG+ GD+ + G +AF+ +
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRG---FAFIYY 60
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMNK 370
+L + NL+P+V+ L +F G+VK ++ P F+EF MN
Sbjct: 184 SLVIMNLEPTVSSSTLRHIFQVYGEVK--QVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
Query: 371 RVVLDKEMKVNWATSPGNQPKTDTSNHHH 457
+V+ K M + ++ G K ++H H
Sbjct: 242 KVISGKPMVIQFSRPGGLTKKLFFASHFH 270
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
++VG+L +I + + F+ +G + + P + GYAFV F DAE AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEFDDARDAEDAI 62
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEF 52
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.9 bits (69), Expect = 0.37
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQA 634
H++VG+L I L + F FGE+ + + P + YAFV+F DA AAI++
Sbjct: 24 HLWVGNLPHGILERELADRFLRFGELES--LAFQP----GRSYAFVNFNHDEDAFAAIES 77
Query: 635 M 637
+
Sbjct: 78 L 78
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
I+VG+L +I + + F+ +G + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAI 62
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
I+VG+L +I + + F+ +G + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDADDAI 62
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + E + LF + G V + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEF 52
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
+++G++S L E F+ GEI + D T G+ FV F + D E A++
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVK 93
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 0.49
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +2
Query: 455 HIFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
H++VG+ + + L F+ FG + +KS GYAFV F + DAE AI+
Sbjct: 3 HVYVGNFDYDTRHSDLERLFSKFGRVKRV-------DMKS-GYAFVYFEDERDAEDAIR 53
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.1 bits (67), Expect = 0.65
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 164 NMGDESHPK---TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDP--YAFLEFT 328
N G S P+ +LY+ NLD V+E L +F G V + ++ + +AF+EF
Sbjct: 6 NHGSSSCPRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFE 65
Query: 329 CHXXXXXXXXXMNKRVVLDK 388
M+ R++ K
Sbjct: 66 SADSAGRAMLHMDGRLIGQK 85
>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 425
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 149 RLR*ANMGDESHPKTLYVG-NLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPY 310
+LR +N + HP+ + N +P E + LFG I +K I + + PY
Sbjct: 10 QLRESNNNQKVHPQPMEESINQNPEAMEALISNLFGNISSLKSAYIELQSAHTPY 64
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.7 bits (66), Expect = 0.86
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG+ E + L F +G + D +KS GYAFV F + DAE AI+ +
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRV-------DRVDMKS-GYAFVYFEDERDAEDAIRKL 55
Query: 638 N 640
+
Sbjct: 56 D 56
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 598
I++G ++ +E + + G + +C DP T K KG+ F F
Sbjct: 206 IYIGKIAT-VENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEF 251
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 30.7 bits (66), Expect = 0.86
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVG+L + + +G + + + + KSKGY V F A A A + M
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 638 N 640
N
Sbjct: 264 N 264
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
+FVGDL L +G + + + + KSKGY V F A A A+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 638 N 640
N
Sbjct: 296 N 296
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQ 631
I+VG+L +I + + + F +G I + + P + Y FV F DAE AI+
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAIK 63
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEFTCHXXXXXXXXXMN 367
K L V NL PS+T L LF G V C I + A++E++ + +N
Sbjct: 351 KFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSI---TDSKHIAYIEYS-NSEEATAALALN 406
Query: 368 KRVVLDKEMKVNWATSPGNQPKTDTSN 448
V + + V A S ++P ++ S+
Sbjct: 407 NTEVFGRALNVEIAKSLPHKPSSNNSS 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 464 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN 640
V +LSP + T LR+ F+ G + +C I SK A++ + +A AA+ N
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSIT------DSKHIAYIEYSNSEEATAALALNN 407
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAM 637
++VG L+ + +R+ F GEI + RI L K AFV++ + AE A + +
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRI------LAEKACAFVTYTTREGAEKAAEEL 283
Query: 638 N 640
+
Sbjct: 284 S 284
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 524 GEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
G + N +V DP T KG AFV+F K A+
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAV 503
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAI 628
I+VG+L +I + + F +G I + + P + GYAFV F DA+ AI
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAI 62
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 188 KTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
+T+YVGNL + + + LF + G + + P YAF+EF
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEF 52
>At1g05400.1 68414.m00548 hypothetical protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 161
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 235 PMYVVWSNRRCKRLQDYTGARK*PVCISRVYVSHG 339
P+YV W +RC DY R P CI R+ G
Sbjct: 13 PVYVYWDMKRCPVPDDYDARRVGP-CIKRILRKSG 46
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +2
Query: 458 IFVGDLSPEIETNILREAFAPFGEISNCRI 547
+FVG+L +++ ++ + F+ FGE+ + RI
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 161 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 268
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 161 ANMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDV 268
A+ D +Y+ NL P VT L LFG IG V
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQV 306
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 337 GGGHSAGRH-EQASGPRQGNEG*LGDESW 420
GGGHS+GR + G R G G G++ W
Sbjct: 14 GGGHSSGRRGGRGGGGRGGGGGGRGEQRW 42
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVKGCKII--REPGNDPYAFLEFTCHXXXXXXXXXM 364
++YVG L +TE + +F G V KI+ R Y F+ F+ M
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 365 NKRVVLDKEMKVNWATSPGNQ 427
+ + + + ++VN T+ G +
Sbjct: 68 DGKSIGGRAVRVNDVTTRGGR 88
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 164 NMGDESHPKTLYVGNLDPSVTEVFLCTLFGQIGDVKGCKIIREPGNDPYAFLEF 325
N+ D TL++GNL ++ E L +L K KI+R+ F+EF
Sbjct: 225 NIKDNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQE-RHTVCFIEF 277
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +2
Query: 461 FVGDLSPEIETNILREAFAPFGEI--SNCR 544
+VG+L + E N L+ AF+ FG++ SN R
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVR 40
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 194 LYVGNLDPSVTEVFLCTLFGQIGDVK 271
LY+ NLD V+ + LF ++GD+K
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLK 135
>At3g24440.1 68416.m03067 fibronectin type III domain-containing
protein contains Pfam profile PF00041: Fibronectin type
III domain
Length = 602
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -2
Query: 349 CGRRRVTRKLEKCIRVISWLP---YNLATFYIAYLT 251
C + LEKC++VI WL + TF + +LT
Sbjct: 514 CDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLT 549
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 191 TLYVGNLDPSVTEVFLCTLFGQIGDVK 271
T+Y+ NLD VT + L+ +IG++K
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELK 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,885,139
Number of Sequences: 28952
Number of extensions: 292729
Number of successful extensions: 1152
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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