Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e08
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 33 0.027
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.11
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.25
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 28 0.77
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 28 1.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.8
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.3
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 4.1
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 4.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 4.1
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 5.4
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 5.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 5.4
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 5.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.5
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 33.1 bits (72), Expect = 0.027
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 392 IPVDVKAASSSHNLTF--TFSLQFSRELVNLFSSSESRYK*YPI 267
I V V A+ +S NL F S F L+N+FSS+ S+Y+ YPI
Sbjct: 580 ISVPVSASDASSNLAFLTNMSSNFLSVLLNVFSSTPSQYR-YPI 622
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 31.1 bits (67), Expect = 0.11
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 SDEEKRLTSSRENCNEKVKVKLCDEEAALT--STGMGRSTTTEDIDDHLMSEEDMKQSLK 465
S+EE + ++ N +EK VK+ DE A +T ++ +G+S+ D SE + S
Sbjct: 147 SNEEVGIPAT--NSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSET 204
Query: 466 MAKEAIANLERDLQKMDTKSSPK 534
+E A + D + M + PK
Sbjct: 205 DVEEEKAEEKSDAESMAPSTPPK 227
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/84 (20%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 88 LGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKK 267
L E L+ D D +R+R+++++ + + ++ + NG + KK +VK++
Sbjct: 42 LSESLNKKSKSESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEE 101
Query: 268 IGYH-LYRDSDEEKRLTSSRENCN 336
++ + + S + KR++ + + N
Sbjct: 102 EDFNEIAKPSPKHKRVSKANGSKN 125
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.3 bits (60), Expect = 0.77
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +1
Query: 289 DSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKM 468
DS EE RLTSSR + + E S+ S+ E + E K+++
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAA 77
Query: 469 AKEAIANLERDLQKMDTKS 525
++++ ++ E ++ +T+S
Sbjct: 78 SEDSESDSESSEEEEETES 96
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 1.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 211 GISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTS-SRENCNEKVKVKLCDEEAALTST 387
GI N LHA KP+I K +HL+ S L S S E+ + DE T
Sbjct: 128 GIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSSEDNADATNSFYLDEPEFCTIK 187
Query: 388 G 390
G
Sbjct: 188 G 188
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 136 DTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLT 315
+T+ RKS+ E HH N+ D S SL + +K + HL R S +
Sbjct: 1293 ETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDS---RKSLHRHLSRSSSRASKKP 1349
Query: 316 S 318
S
Sbjct: 1350 S 1350
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/87 (22%), Positives = 37/87 (42%)
Frame = +1
Query: 241 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 420
KKP KK + + +E+ + E +EK V+ + + S +D+
Sbjct: 75 KKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK-PVRKNKKSSKKASPKNAFDALADDM 133
Query: 421 DDHLMSEEDMKQSLKMAKEAIANLERD 501
DD + EE+ + S K K+ + +D
Sbjct: 134 DDLSLDEEESESSEKSKKKKKKSKSKD 160
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 2.3
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +1
Query: 214 ISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGM 393
I R L + G H DSDE K SS E+ +E + K ++ +L +
Sbjct: 258 IPGRRPLSISSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSLNDPFV 317
Query: 394 GRSTTTEDIDDHLMSEEDMKQSLKMAK 474
T + +H +SEE K S K ++
Sbjct: 318 ---TIRKSSYEHEISEEHKKHSKKRSE 341
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 379 TSTGMGRSTTTEDIDDHLMSEE 444
+ G+ ST ED+D+H +S+E
Sbjct: 658 SQAGINPSTKLEDLDEHTLSDE 679
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 4.1
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +1
Query: 241 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 420
+KP + KKK E T +EN ++ + +EEA + R+T+ +
Sbjct: 297 RKPTLRKKKS----IPKKQNESSSTIQKENTVQQ-EASSSEEEAVKSLPETQRTTSRIET 351
Query: 421 DDHLMSEEDMKQSLKMAKEAIANLERDLQKMD 516
+ + EE+M+ + +E + N E + + D
Sbjct: 352 QEEEIKEEEMEGEEEEEEEEVPNYESENELED 383
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 292 SDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGR 399
SD+E+ + C EK K K C+ E + G GR
Sbjct: 74 SDDEESCEKKKPKCCEKKKPKCCESE---QNNGCGR 106
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 4.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 175 ELDHHLNQNVDDGISN 222
E+DHH+ + +DD +SN
Sbjct: 394 EIDHHVQEIIDDVVSN 409
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 361 DEEAALTSTGMGRSTTTEDIDDHLMSE-EDMKQSLKMAKEAIANLERDLQKMDTK 522
+ + L + + + ED HL E D+KQ + + LERD++ +D+K
Sbjct: 27 ESTSVLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSK 81
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 5.4
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 226 RSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRST 405
+S H+ K ++ Y L + SD + L + ++ N+ + + +A + S ++
Sbjct: 163 KSAHSTKTVVDALYKSY-LEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITS 221
Query: 406 TTEDIDDH--LMSEEDMKQSLKMAKEAIANLE 495
I++ L+SEE+ +SLK + I+NLE
Sbjct: 222 LESLIEEQKKLLSEEE--ESLKSVESIISNLE 251
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/90 (18%), Positives = 35/90 (38%)
Frame = +1
Query: 79 PAQLGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIV 258
PA++ H ++ +T D + E++ L L +++ + + K P+
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 259 KKKIGYHLYRDSDEEKRLTSSRENCNEKVK 348
KK+ Y +E +S+ VK
Sbjct: 856 PKKLRKDRYASVEEFDYFSSTEHASKRSVK 885
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.4
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +1
Query: 274 YHLYRDSDEEKRLTSSRENCNEKVKVKL--CDEEAALTSTGMGRSTTTEDIDDHLMSEE- 444
Y LY + S + C + V + C E L TG G+ + + DH + +E
Sbjct: 492 YALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEFLLDKTGFGQFNASFNNHDHEVEDEQ 551
Query: 445 ---DMKQSLKMAKEAIA 486
D+K +L +++A A
Sbjct: 552 EMTDIKPALPSSQQADA 568
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/76 (21%), Positives = 40/76 (52%)
Frame = +1
Query: 280 LYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQS 459
L + + +KRLT+ E+ + +++ ++ + LTS + TE+++++ + S
Sbjct: 277 LEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENS 336
Query: 460 LKMAKEAIANLERDLQ 507
L+ +E ++ +LQ
Sbjct: 337 LRELQEKYDSVVSELQ 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,350
Number of Sequences: 5004
Number of extensions: 34123
Number of successful extensions: 130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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