Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e07
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)           216   2e-56
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 120   8e-28
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            76   3e-14
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   6e-05
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   31   0.64 
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 31   1.1  
SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)                 29   2.6  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)                    28   7.9  
SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)              28   7.9  
SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)                28   7.9  

>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score =  216 bits (527), Expect = 2e-56
 Identities = 100/129 (77%), Positives = 114/129 (88%)
 Frame = +1

Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
           YDLSASQFSPDGRVFQVEYA KAVENSGT I +R KDGVVF VEKL+ SKLYE GANKRI
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKRI 196

Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
           FHID H+GMA+AGLI+D+RQIV TAR EA+NYRS YGSP+PLKYL  RVS ++HA+TLYS
Sbjct: 197 FHIDTHIGMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYS 256

Query: 514 AVRPYGCSV 540
           A+RP+GC +
Sbjct: 257 AMRPFGCRI 265


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  120 bits (290), Expect = 8e-28
 Identities = 61/150 (40%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
 Frame = +1

Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
           YD + + FSPDG +FQVEYA +AV+   T +G+RG + VV  VE+   +KL EP   ++I
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKI 64

Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
             +D+HV MA AGL +DAR +V  AR E  +++     PV L+Y+   ++     YT  +
Sbjct: 65  CTLDDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSN 124

Query: 514 AVRPYGCSVVMGTWTDYEG-PQMYMLDPSG 600
             RP+G S ++    D++G P++Y  DPSG
Sbjct: 125 GRRPFGISTLI-VGFDFDGTPRLYQTDPSG 153


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 1/174 (0%)
 Frame = +1

Query: 151 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 327
           G+D   + FSP+GR++         +  G T +G+RG D  V   +K +   + +     
Sbjct: 8   GFDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKKVPLPIPQ----- 62

Query: 328 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTL 507
                            +D+R  V+ AR EA+N++ ++G  +P+  L +R++     YT 
Sbjct: 63  -----------------ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQ 105

Query: 508 YSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
            + +RP GC +++    + +GPQ+Y  DP+G    +  C+VG  +  A + +EK
Sbjct: 106 NAEMRPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEK 159


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/53 (35%), Positives = 34/53 (64%)
 Frame = +1

Query: 376 ISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGC 534
           ++D+R  V+ AR EA+N++ ++G  +P+  L +RV+     YT  + +RP GC
Sbjct: 25  VADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +1

Query: 196 FQVEYAAKAVE-NSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVA 369
           F+ E     +E N   +I + GK+ V  A ++ +  +      + ++IF + E + + + 
Sbjct: 65  FRKEAVMSIMEYNGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLP 124

Query: 370 GLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMH 495
           GL +D + I    +   + Y  + G P+  K     VS  ++
Sbjct: 125 GLATDVQTISSRLKFRLNLYELREGRPIKPKTFLSMVSNLLY 166


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = -3

Query: 401  STICLASDMSPATAMP-TCSSIWNILLFAPGSYSLDVINFSTANTTPSFPRRPITVPEFS 225
            +T+       P T  P + S+   I    PGS S    + +T  T+P  P+ P T+P  +
Sbjct: 871  TTVAPPMTSGPTTTTPISTSAAPEITTANPGSPSTTTKSVTTPQTSPKTPQTPATLP--T 928

Query: 224  TAFAAYSTWKTRPS 183
            T      T KT P+
Sbjct: 929  TQTPEPGTEKTMPT 942


>SB_37508| Best HMM Match : S-antigen (HMM E-Value=4.3)
          Length = 1347

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
 Frame = +1

Query: 190 RVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-------KRIFHIDE 348
           RV Q EY        G +  L  K+GV  +  +L+T++L E G          R+  ++ 
Sbjct: 444 RVLQEEYV-----ELGAMTDLSAKNGVTRSAYELVTNRLPELGDGVTDHCVLPRVSQVER 498

Query: 349 HVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHA 498
                + G ISD   +   A    +N  S+ G  V    L  RVS   HA
Sbjct: 499 AENFLMTG-ISDENGVTLPAYELVTNRVSELGDNVTDHCLMPRVSQVEHA 547


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 520 EQRCIVCMRACTLKLVHLNTS----VVLDCHTEICSLMPLNEQSR 398
           E++C +C   C L  V    S      LDC +E+C+  P ++  R
Sbjct: 690 ERQCQICKTTCFLSAVTCKCSEERLTCLDCASELCACRPSDKTLR 734


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 VRPYGCSVVMGTWTDYEGPQMYMLDPS 597
           VRP+G S+++  W D + P ++  DPS
Sbjct: 3   VRPFGVSLLVAGWDD-DRPYLFQCDPS 28


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 466 LNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 588
           + E+ S Y+ AY L   +     + ++GTW+D  G +  ML
Sbjct: 77  VQEKASQYILAYNLALQLPAVLTACLLGTWSDKNGRKPLML 117


>SB_46006| Best HMM Match : MAAL_N (HMM E-Value=3.7)
          Length = 260

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 545 WAHGQTMKALRCIC*IP 595
           WA G+T +A RC+C +P
Sbjct: 16  WAGGRTARARRCVCVLP 32


>SB_18652| Best HMM Match : ATP-gua_Ptrans (HMM E-Value=0)
          Length = 725

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 388 RQIVETARSEASNYRSQYGSPVPLK 462
           R+IV    +EA  YRS+   PVPLK
Sbjct: 4   RRIVMADAAEAEKYRSKNAYPVPLK 28


>SB_17161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +1

Query: 376 ISDARQIVETARSEASNYRSQYGS--PVPLKYLNERVSMYMH--AYTLYSAVRPY 528
           I DA Q  E  + +A  + +++GS   V L Y  ERV+ YMH  AY +   +R Y
Sbjct: 401 IEDAMQWDE--KEKAKEWITKFGSLGDVRLGYKKERVTCYMHVAAYHVPPMIRRY 453


>SB_53415| Best HMM Match : efhand (HMM E-Value=2.7e-12)
          Length = 923

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -3

Query: 362 AMPTCSSIWNILLFAPGSYSLDVINFSTANTTPSFPRRPITVPEFSTAFAAYSTWKTRPS 183
           AM     + ++L  +P S+ L    F+T N   S     I++P  ST   +YS     PS
Sbjct: 400 AMRRVCRVLSMLALSPSSHFLYRTRFTTPNRIVSTHPPFISLPLLSTGIPSYSETSPSPS 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,018,533
Number of Sequences: 59808
Number of extensions: 477956
Number of successful extensions: 1185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)