Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e07
(673 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 250 6e-67
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 144 6e-35
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 137 7e-33
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 137 7e-33
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 127 6e-30
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 126 2e-29
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 125 2e-29
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 125 3e-29
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 124 7e-29
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 123 1e-28
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 118 4e-27
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 118 4e-27
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 40 0.001
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 40 0.002
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 34 0.075
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 34 0.075
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 34 0.099
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 34 0.099
At1g43245.1 68414.m04985 expressed protein 30 1.2
At2g22500.1 68415.m02669 mitochondrial substrate carrier family ... 29 2.8
At4g05110.1 68417.m00759 equilibrative nucleoside transporter, p... 29 3.7
At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containi... 28 4.9
At3g20710.1 68416.m02621 F-box protein-related contains weak hit... 28 4.9
At3g17450.1 68416.m02228 hAT dimerisation domain-containing prot... 28 6.5
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 6.5
At5g62730.1 68418.m07875 proton-dependent oligopeptide transport... 27 8.6
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 250 bits (612), Expect = 6e-67
Identities = 115/180 (63%), Positives = 145/180 (80%)
Frame = +1
Query: 133 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 312
MSSIGTGYDLS + FSPDGRVFQ+EYAAKAV+NSGTV+G++ KDG+V VEKLI SK+
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60
Query: 313 PGANKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYM 492
PG+N+RI + H GMAVAGL +D RQIV A+SEA +Y S YG VP+K L+ERV+ Y+
Sbjct: 61 PGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYV 120
Query: 493 HAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEKL 672
H TLY +RP+GC V++G + D +GPQ+YM++PSG+S+ YFG A+GK KQAAKTEIEKL
Sbjct: 121 HLCTLYWWLRPFGCGVILGGY-DRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKL 179
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 144 bits (348), Expect = 6e-35
Identities = 69/173 (39%), Positives = 108/173 (62%), Gaps = 1/173 (0%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 330
YD + FSP+GR++QVEYA +A+ N+G+ IG+ KDGVV EK +TSKL + + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEK 64
Query: 331 IFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLY 510
++ ID+HV AVAG++SDA ++ TAR +A Y Y P+P++ L + + YT +
Sbjct: 65 MYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQF 124
Query: 511 SAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
+RP+G S + W + G Q+YM DPSG + AVG QAA++ +++
Sbjct: 125 GGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQ 177
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 137 bits (331), Expect = 7e-33
Identities = 70/177 (39%), Positives = 108/177 (61%), Gaps = 3/177 (1%)
Frame = +1
Query: 148 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 327
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AVEK ITS L EP + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 328 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNER---VSMYMHA 498
+I ID+H+G A++GLI+DAR +VE AR E N+R YG P+ ++ + +++
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
Query: 499 YTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
S RP+G S+++ D GP +Y DPSG + A+G + A + +++
Sbjct: 126 GEEESMSRPFGVSLLI-AGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 181
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 137 bits (331), Expect = 7e-33
Identities = 70/177 (39%), Positives = 108/177 (61%), Gaps = 3/177 (1%)
Frame = +1
Query: 148 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 327
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AVEK ITS L EP + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 328 RIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNER---VSMYMHA 498
+I ID+H+G A++GLI+DAR +VE AR E N+R YG P+ ++ + +++
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGE 125
Query: 499 YTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
S RP+G S+++ D GP +Y DPSG + A+G + A + +++
Sbjct: 126 GEEESMSRPFGVSLLI-AGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQE 181
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 127 bits (307), Expect = 6e-30
Identities = 65/177 (36%), Positives = 106/177 (59%), Gaps = 2/177 (1%)
Frame = +1
Query: 145 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGA 321
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V +K + KL + +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 322 NKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAY 501
+F I +++G+ G+ +DAR +V+ AR++A+ +R YG +P+ L + ++ Y
Sbjct: 66 VTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVY 125
Query: 502 TLYSAVRPYG-CSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
T ++ +RP G ++VMG + GP +Y DP+G + + + G +Q A +EK
Sbjct: 126 TQHAYMRPLGVVAMVMGV-DEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEK 181
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 126 bits (303), Expect = 2e-29
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
YD + + FSPDG +FQVEYA +AV +G+RG D VV AVEK T KL + + ++I
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
+D H+ +A AGL +DAR ++ AR E ++R PV ++Y+ ++ YT
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSG 123
Query: 514 AVRPYGCSVVMGTWTDYEG-PQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
VRP+G S ++ + Y P +Y DPSG ++ A G+ + + +EK
Sbjct: 124 GVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEK 176
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 125 bits (302), Expect = 2e-29
Identities = 62/176 (35%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Frame = +1
Query: 145 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGA 321
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V +K + KL + +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 322 NKRIFHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAY 501
+F + +++G+ G+ +D+R +V+ AR+EA+ +R QYG +P L + ++ Y
Sbjct: 66 VSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVY 125
Query: 502 TLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
T ++ +RP G ++ + GP +Y DP+G + + + G +Q A +EK
Sbjct: 126 TQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEK 181
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 125 bits (301), Expect = 3e-29
Identities = 63/173 (36%), Positives = 97/173 (56%), Gaps = 1/173 (0%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
YD + + FSPDG +FQVEYA +AV +G+RG D VV AVEK T KL + + ++I
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
+D H+ +A AGL +DAR ++ AR E ++R PV ++Y+ ++ YT
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSG 123
Query: 514 AVRPYGCSVVMGTWTDYEG-PQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
VRP+G S ++ + Y P +Y DPSG ++ A G+ + + +EK
Sbjct: 124 GVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEK 176
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 124 bits (298), Expect = 7e-29
Identities = 61/172 (35%), Positives = 100/172 (58%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A EK + S L + + ++I
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
H+ ++G+ +G+ D R +V +R +A Y Y P+P+ L + M +T
Sbjct: 66 QHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSG 125
Query: 514 AVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
VRP+G S+++ + D +GPQ+Y +DPSG FS+ A+GK AKT +EK
Sbjct: 126 GVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 123 bits (296), Expect = 1e-28
Identities = 61/172 (35%), Positives = 99/172 (57%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A EK + S L + + ++I
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
H+ ++G +G+ D R +V +R +A Y Y P+P+ L + M +T
Sbjct: 66 QHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSG 125
Query: 514 AVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
VRP+G S+++ + D +GPQ+Y +DPSG FS+ A+GK AKT +EK
Sbjct: 126 GVRPFGVSLLVAGYDD-KGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEK 176
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 118 bits (284), Expect = 4e-27
Identities = 66/172 (38%), Positives = 95/172 (55%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
YD + +SP GR+FQVEYA +AV+ IGLR + VV A S+L ++I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKI 63
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
F +D+H+G+A+AGL +D R + RSE+ N+ Y SP+P+ L ++ T S
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRS 123
Query: 514 AVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
RPYG +++G D G +Y PSG F Y A+G QAAKT +E+
Sbjct: 124 WKRPYGVGLLVG-GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 118 bits (284), Expect = 4e-27
Identities = 66/172 (38%), Positives = 95/172 (55%)
Frame = +1
Query: 154 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 333
YD + +SP GR+FQVEYA +AV+ IGLR + VV A S+L ++I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKI 63
Query: 334 FHIDEHVGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS 513
F +D+H+G+A+AGL +D R + RSE+ N+ Y SP+P+ L ++ T S
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRS 123
Query: 514 AVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
RPYG +++G D G +Y PSG F Y A+G QAAKT +E+
Sbjct: 124 WKRPYGVGLLVG-GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 238 TVIGLRGKDGVVFAVEKLITSKLYEPG-ANKRIFHIDEHVGMAVAGLISDARQIVETARS 414
T+IG+ GVV + ++ +Y A+ +I + ++V + +G +D++ + + R
Sbjct: 14 TIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRY 73
Query: 415 EASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDP 594
+ Q+G P +K VS + Y+ +++G W YEG ++Y +
Sbjct: 74 FLHQHTIQHGQPATVK-----VSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPL 128
Query: 595 SG 600
G
Sbjct: 129 GG 130
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +1
Query: 259 KDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAG 372
KDGVV EK +TSKL + ++ ++++ ID+HV AVAG
Sbjct: 322 KDGVVLVGEKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 553 WTDYEGPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIEK 669
W G Q+YM DPSG + AVG QAA++ +++
Sbjct: 361 WDRNHGFQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQ 399
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 34.3 bits (75), Expect = 0.075
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Frame = +1
Query: 211 AAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDA 387
A ++ T++GL KDGV+ + T N ++I ++ ++ AG +D
Sbjct: 32 APSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADT 91
Query: 388 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 567
+ + S+ +R Q G + + + H ++ V ++V+G D
Sbjct: 92 EAVTDMVSSQLRLHRYQTGR--DSRVITALTLLKKHLFSYQGHV---SAALVLG-GVDIT 145
Query: 568 GPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIE 666
GP ++ + P G + + +G AA + E
Sbjct: 146 GPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE 178
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 34.3 bits (75), Expect = 0.075
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Frame = +1
Query: 211 AAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDA 387
A ++ T++GL KDGV+ + T N ++I ++ ++ AG +D
Sbjct: 32 APSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADT 91
Query: 388 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 567
+ + S+ +R Q G + + + H ++ V ++V+G D
Sbjct: 92 EAVTDMVSSQLRLHRYQTGR--DSRVITALTLLKKHLFSYQGHV---SAALVLG-GVDIT 145
Query: 568 GPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIE 666
GP ++ + P G + + +G AA + E
Sbjct: 146 GPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE 178
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 33.9 bits (74), Expect = 0.099
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Frame = +1
Query: 211 AAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDA 387
A ++ T++GL KDGV+ + T N ++I ++ ++ AG +D
Sbjct: 32 APSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADT 91
Query: 388 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 567
+ + S+ +R Q G + + + H ++ V ++V+G D
Sbjct: 92 EAVTDMVSSQLRLHRYQTGR--DSRVVTALTLLKKHLFSYQGHV---SAALVLG-GVDIT 145
Query: 568 GPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIE 666
GP ++ + P G + + +G AA + E
Sbjct: 146 GPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE 178
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 33.9 bits (74), Expect = 0.099
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Frame = +1
Query: 211 AAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAGLISDA 387
A ++ T++GL KDGV+ + T N ++I ++ ++ AG +D
Sbjct: 32 APSFLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADT 91
Query: 388 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 567
+ + S+ +R Q G + + + H ++ V ++V+G D
Sbjct: 92 EAVTDMVSSQLRLHRYQTGR--DSRVVTALTLLKKHLFSYQGHV---SAALVLG-GVDIT 145
Query: 568 GPQMYMLDPSGVSFSYFGCAVGKAKQAAKTEIE 666
GP ++ + P G + + +G AA + E
Sbjct: 146 GPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFE 178
>At1g43245.1 68414.m04985 expressed protein
Length = 558
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 194 TRPSGEN*EADRS*PVPIELMFTHCLIYFDFYQD 93
TR +GE E+ + V + L+ +HCL+Y D D
Sbjct: 510 TRTNGEREESSKDQTVNVLLLSSHCLLYADLLTD 543
>At2g22500.1 68415.m02669 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 313
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 457 LKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDP--SGVSFSYFGCAV 630
++ L VS + TLYS R ++ G WTD E M ++ +G G AV
Sbjct: 77 MRALFSGVSATVLRQTLYSTTRMGLYDIIKGEWTDPETKTMPLMKKIGAGAIAGAIGAAV 136
Query: 631 GKAKQAAKTEIE 666
G A ++
Sbjct: 137 GNPADVAMVRMQ 148
>At4g05110.1 68417.m00759 equilibrative nucleoside transporter,
putative (ENT6) identical to putative equilibrative
nucleoside transporter ENT6 [Arabidopsis thaliana]
GI:16518997; contains similarity to SWISS-PROT:O54699
equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter, Equilibrative NBMPR-insensitive
nucleoside transporter, Nucleoside transporter, ei-type)
[Rattus norvegicus]; contains Pfam profile PF01733:
Nucleoside transporter
Length = 418
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 355 GMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYLN--ERVSMYMHAYTL 507
GMAVAG ++ A +++ A E SN + G+ + L E +S+ ++AY L
Sbjct: 154 GMAVAGALTSALRLITKAAFEKSNNGLRKGAMMFLAISTCIELLSVMLYAYVL 206
>At5g43820.1 68418.m05358 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 680
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -2
Query: 333 YPLVCARFIQFG-CD*LLN---SKYHSVFSSEANYCSRIFYSLCSIFHLENATI 184
Y L+ R +FG C LLN S + S+ I LC I HLENA +
Sbjct: 433 YKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVL 486
>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 362
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +1
Query: 430 RSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSF 609
R ++G+P+PL + NE +++ Y SA++ +V++ W ++P VS+
Sbjct: 225 RERFGTPLPLPFSNEGYTLH-KGYKSLSALKEEKLAVLL--WDTMVIWVTNKIEPDAVSW 281
Query: 610 SYF 618
S F
Sbjct: 282 SIF 284
>At3g17450.1 68416.m02228 hAT dimerisation domain-containing protein
contains Pfam profile PF04937: Protein of unknown
function (DUF 659)
Length = 877
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +1
Query: 529 GCSVVMGTWTDYEGPQM--YMLD-PSGVSF 609
GCS++ TWT+ EG +M +++ P GV F
Sbjct: 374 GCSIMADTWTNTEGKKMISFLVSCPRGVYF 403
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 27.9 bits (59), Expect = 6.5
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +1
Query: 193 VFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRIFHIDEHV----GM 360
V +V + SG ++GL G DG+ K +T + E AN I +DE
Sbjct: 945 VHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAV-ELVANPSIVFMDEPTSGLDAR 1003
Query: 361 AVAGLISDARQIVETARS 414
A A ++ R IV T R+
Sbjct: 1004 AAAIVMRTVRNIVNTGRT 1021
>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 589
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 352 VGMAVAGLISDARQIVETARSEASNYRSQYGSPVPLKYL 468
V MAVA L+ R+ V + +N S SP+P+ +L
Sbjct: 438 VAMAVAALVETKRKHVVVSCCSNNNSSSYSSSPLPITFL 476
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,015
Number of Sequences: 28952
Number of extensions: 327417
Number of successful extensions: 913
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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