Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e06
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         56   2e-08
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       47   1e-05
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.44 
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.77 
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)                28   7.2  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 28/80 (35%), Positives = 49/80 (61%)
 Frame = +1

Query: 133 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 312
           A  +V++   +Q + L N   VA+L+  SP++RV + F AGSRYE  + LG++H+LR+AA
Sbjct: 20  AKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHMLRNAA 79

Query: 313 GLTTKNISSFLIQRKLSQIG 372
            L         + ++++ +G
Sbjct: 80  YLLLDFKGKHFVGKRMALVG 99


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
 Frame = +1

Query: 172 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSF-LI 348
           + LPN   VA+ ++    + V +    GSRYE     G++HV+   A  +T    S   I
Sbjct: 420 TTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSHDDI 479

Query: 349 QRKLSQIGAYVSASGDREFIYYTLEATQDKLNDALEILNNLVSNQEFRPWELNDNAPRLK 528
            ++L  +G     +  R+ I Y   +    L  A+E+L+  V   +    E+++    ++
Sbjct: 480 MQELEPVGGMADCTSFRDAIVYGTSSFTSGLPLAVEVLSEAVMRPQITSQEVDEQKMLVQ 539

Query: 529 YDI----ISLPPQIRAVDLLH 579
           +++    + L P+    D++H
Sbjct: 540 FELENLEMRLDPEPILTDMVH 560


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +1

Query: 154 DVRIQSSVLPNKTFVAAL---DNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 324
           D + +   LP   +VA     D+G+P T+      +    E   E+G+ H+LR    LT 
Sbjct: 114 DAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIKNLTA 173

Query: 325 KNISSFLIQRKLSQIGAYVSASGDREFI 408
             +S  +  +  S  G +      R+++
Sbjct: 174 GTLSQRITNQLTSLKGLHARLGDIRDYL 201


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 3   REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKER 155
           R D VN +  L   L+  +  E GI   RR LYS C+D+ +R       ER
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER 185


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 166 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 258
           Q S L N T+    DNGSP+T V I    GS
Sbjct: 546 QFSHLVNLTWKLGRDNGSPITHVIIQQHVGS 576


>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 38  LLPKVSKNLRKWHP-----KLSSPPLFVMLRSGATPKLR 139
           L P+VSK L+ WH       +SSPP   + R G   K++
Sbjct: 230 LQPRVSKYLKVWHECIPANDISSPPFQRLKREGLADKVK 268


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 123 APDRNMTNKGGDESFGCHFRKFLETLGSNATK 28
           A +R M  +GG + FG  F K++ET  S+ATK
Sbjct: 533 AGERAMLVRGGGKDFGICFGKWIET--SDATK 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,268,920
Number of Sequences: 59808
Number of extensions: 394060
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)