Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e04
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    36   0.005
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    28   1.1  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   1.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   2.4  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.5  
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   9.9  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 459 VIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGDG 602
           VI+T  P K+EF  ++GE  VVLNE   L +E  R +  +  +++ +G
Sbjct: 168 VIVTFSPFKVEF-QRDGEPQVVLNERHLLNMEYYRPKSSRTPEQEANG 214


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 399 LKLISKDD-GKVILVNTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLV 551
           L ++ K + GKV+L   +  K +   + LK EF+ +N EV    +E    LV
Sbjct: 686 LSVLGKGNFGKVMLAELKSEKQLYAIKVLKKEFILENDEVESTKSEKRVFLV 737


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +3

Query: 411 SKDDGKVILVNTQGHKVIITSEPLKLEFLDQNGEVAV----VLNENSQLLVE 554
           ++D+  V  +  QG   ++ S+P KL FL+Q  +  +    ++ ++ QL +E
Sbjct: 492 NEDEPSVQTIQLQGKIRVVPSKPFKLNFLEQIRDNVINLRKMVEQDEQLCIE 543


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 326 LVHGNVLSAEVVTIDAADEKRTVLIKTDFERRWKSYSRQHAR 451
           L H   L+ +++ ID     +   I  DF   W +Y RQ AR
Sbjct: 304 LKHLGCLAVKMLDIDGIRVDKATQITADFLGDWSAYIRQCAR 345


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 441 NTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLV---EPLRARRE 575
           NTQ   V +TSE   L+F  QN   ++ + +  Q+LV   E LR  R+
Sbjct: 97  NTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRLQMLVTAYEKLRTLRQ 144


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 179 RPRPSSWVFIAILCRHKPITKCPSGIFNNTSQLDTL*GIIF 57
           R    +++F++++C  + I   P G+F+    L      IF
Sbjct: 415 RANYDNYIFLSLICETRAIIVSPEGVFSANHDLSCEESTIF 455


>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 23/78 (29%), Positives = 35/78 (44%)
 Frame = +2

Query: 305 SLNLDSILVHGNVLSAEVVTIDAADEKRTVLIKTDFERRWKSYSRQHARA*SHHNIRTFE 484
           S++L+ I  HG V S   + +     +  + IK  + R  +  +R+H    S H  R   
Sbjct: 111 SVSLEDIFTHGTVESVIPLFMKKRHPEAYLRIKLVYTRSKRKSARKHKVPSSFH--RFSG 168

Query: 485 TRILGPEWRSSGRSQREL 538
            R LG  +  SG SQ  L
Sbjct: 169 RRGLGIHYNHSG-SQSSL 185


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 215 SAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAE 355
           S  D  KF+T + SG    + P K     ++   D+IL    V S +
Sbjct: 42  SLKDLKKFETLNVSGKVPHVLPLKSHADPFAHIADAILAEEEVASTQ 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,257
Number of Sequences: 5004
Number of extensions: 53938
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)