Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e04
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423 34 0.12
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 33 0.27
08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271 30 1.5
12_02_0437 - 19084990-19087695 30 1.9
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 29 2.5
09_01_0032 - 541411-541737,542751-543752 29 2.5
03_06_0336 - 33220493-33220986,33221077-33221252,33221357-332214... 29 4.4
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828... 29 4.4
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 28 7.7
>06_01_0271 + 2009125-2009424,2009534-2009707,2010268-2010423
Length = 209
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 489 EFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDEEGTWSETXP 650
E +++ + +L++ L E + E+EDG+GAN ++EEG W P
Sbjct: 151 ESMERGSRILAILDK----LKEEREQQEGNEEEEDGEGANLSEEEEGDWDADEP 200
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 227 KNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDS 322
K++F+ C+Q+ FCKR R P L+LD+
Sbjct: 31 KDEFRNCNQTPFCKRARTRAPHSLDAPLSLDA 62
>08_01_0280 + 2283046-2283532,2285406-2285629,2286630-2287271
Length = 450
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +3
Query: 408 ISKDDGKVILVNTQGHKVIITSE-PLKLEFLDQNGEVAVVLNENSQLLVEPLRARREKVE 584
+S DD +++L++++G KV++TS+ +KL V+V N ++ V+ +A VE
Sbjct: 351 MSIDDERIVLLDSRGEKVVVTSDGNIKL----SRRVVSVESNTELKVSVKAWKADNNVVE 406
Query: 585 DED 593
+E+
Sbjct: 407 NEN 409
>12_02_0437 - 19084990-19087695
Length = 901
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -1
Query: 548 EQLRVLVENDRYFSILVQEFEFQRFGCYDDFMPLRVDENNFSIVFRNQF*SKL 390
+ + +EN RY +L ++ + C++D P R + I RN+ +KL
Sbjct: 271 QAIHTYLENKRYLIVLDDMWDRDSWSCFEDAFPRRSQGSKVIITTRNKEVAKL 323
>10_08_0911 - 21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 LKLISKDDGKVILVNTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARREK 578
L L++K I +NT G +++ + LK+EF+DQ+ V VV + P R R +
Sbjct: 2072 LWLLTKSSLLTISLNTSG-RMVGGFDKLKVEFIDQDESVQVVADTIRSSGEIPERYARPE 2130
Query: 579 VEDE----DGDGAN 608
+E + D DG N
Sbjct: 2131 MEADPVIIDTDGYN 2144
>09_01_0032 - 541411-541737,542751-543752
Length = 442
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 531 ENSQLLVEPL-RARREKVEDEDGDGANQLDDEEGTWSETXPVPS 659
E+ +VE + R R V+DE+ GA + DDE+ E P+P+
Sbjct: 175 EDIPAIVEEIERVDRHAVKDEENLGAKENDDEDEQEVEEVPMPA 218
>03_06_0336 -
33220493-33220986,33221077-33221252,33221357-33221492,
33221731-33221894,33222902-33222969
Length = 345
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 456 KVIITSEPLKLEFLDQNGEVAVVLNENSQLLVE 554
+VII SE + +E D+N + + EN QL +E
Sbjct: 311 RVIINSETIVIEMKDENSLLPNTIQENQQLGIE 343
>01_06_0905 +
32880368-32880633,32882439-32882568,32882704-32882894,
32883625-32883852,32884062-32884224,32884343-32884416,
32884484-32884601,32884722-32884788,32885152-32885223,
32885350-32885513
Length = 490
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 278 PFKPEKSQYSLNLDSILVHGNVLSAEVVTIDAADEKRTVL 397
P P + Y+LNL+SI+V+G L + ++ + T++
Sbjct: 267 PLVPSQPHYNLNLESIVVNGQKLPIDSSLFTTSNTQGTIV 306
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 313 IQTILRFFWFERAEPFTKAGLTACFKFIFVYRRN 212
IQTI F E A KA +CF F +RN
Sbjct: 323 IQTIFTHFMLENANHMRKAATRSCFYAGFAVQRN 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,367,126
Number of Sequences: 37544
Number of extensions: 333241
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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