Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e04
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)              30   2.0  
SB_8074| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)                      29   4.5  
SB_47943| Best HMM Match : Toxin_R_bind_N (HMM E-Value=0.017)          28   6.0  
SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)                    28   7.9  
SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)                    28   7.9  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               28   7.9  

>SB_13633| Best HMM Match : Glyco_hydro_31 (HMM E-Value=0)
          Length = 663

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 408 ISKDDGKVILVN-TQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARR 572
           I+K++   + V+  +   +I+T +P +L+FL  N EV V +N    L  E  RA++
Sbjct: 128 ITKEEANSMHVSFDENSNIIVTYKPFRLDFLVGN-EVVVSINTRGLLNFEHYRAKK 182


>SB_8074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 200 QMPRPGLRPRPSSWVFIAILCRHKPITKCPSG 105
           ++  PG +P P+S   + IL RHK I  C  G
Sbjct: 40  KLDNPGTQPNPASKSPVKILQRHKKIPLCSFG 71


>SB_20018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 486 LEFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDE 623
           LE +D++GEV V   E  + + +  R    ++EDE  D  N  DDE
Sbjct: 28  LEDIDEDGEVKVKTKEKKKTVTKKKRKGGIQLEDEVDDDDND-DDE 72


>SB_40007| Best HMM Match : Arm (HMM E-Value=0.84)
          Length = 274

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 402 KLISKDDGKVILVNTQGHKVII---TSEPLKLEFLDQNGEVAVVLNENSQLLVEPL 560
           KLIS+ DG+ +LV     +++    +  P  LE+LDQ G V  + N   ++  +PL
Sbjct: 212 KLISELDGRDVLVQMNCLELLTKLASISPSGLEYLDQKGVVTKLNNLLLEVETDPL 267


>SB_47943| Best HMM Match : Toxin_R_bind_N (HMM E-Value=0.017)
          Length = 250

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 562 LRGSTSS*EFSLRTTATSPFWSKNSSFKGSDVMMTL 455
           L GS  S   S ++ +T  FW K  SF+G+ ++M L
Sbjct: 63  LSGSCLSDPVSCKSGSTVAFWLKLPSFEGNKIVMQL 98


>SB_5939| Best HMM Match : BAH (HMM E-Value=7.9e-18)
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 438 VNTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGD 599
           + T G+K  I S P+K   LDQN   +    +N++   +P    R  ++ E+GD
Sbjct: 1   MKTSGYKFEIDSSPVKDCMLDQNMNSSAEDKKNNETCNKP---HRRSLKAENGD 51


>SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)
          Length = 173

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 558 LRARREKVEDEDGDGANQLDDEEGTWSETXPV 653
           +RAR+++ EDED DG +  D E+   S +  V
Sbjct: 54  VRARKKEYEDEDEDGDDDDDSEDDRSSSSSHV 85


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +3

Query: 366 LTLRMKSEQF*LKLISKDDGKVILVNTQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQL 545
           L  R KSE    +LIS D+G V+    +G +   + E L    L ++  +A +  EN  L
Sbjct: 345 LKYRKKSEDGSQRLISVDEGVVL----EGSESTNSREKLSSTPL-ESSSLAEMEAENRTL 399

Query: 546 LVEPLRARREKVEDEDGDG---ANQLDDEEGTWSET 644
                R RR K+ED D      A +L++ +G  S T
Sbjct: 400 CENNARMRR-KLEDADKHNELLAYRLEEVQGKLSRT 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,063
Number of Sequences: 59808
Number of extensions: 396650
Number of successful extensions: 1086
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)