Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10e04
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 45 4e-05
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 36 0.034
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 32 0.42
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 32 0.42
AL032646-4|CAA21678.1| 237|Caenorhabditis elegans Hypothetical ... 29 3.9
AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine re... 28 6.9
Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical p... 27 9.1
AF003145-7|AAB57714.2| 352|Caenorhabditis elegans Serpentine re... 27 9.1
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical
protein F40F9.6b protein.
Length = 910
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +2
Query: 173 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSA 352
W + ++ + + V ++ FKTC QS FCK+ R E + Y L DSI HG V +A
Sbjct: 7 WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAI-TEPTGYELLADSITHHGAVWTA 65
Query: 353 EV 358
V
Sbjct: 66 NV 67
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +2
Query: 185 LVAAFVIIG-ISAVDKNKFKTCSQSGFCKRLRPFKPEKSQYSLNLDSILVHGNVLSAEVV 361
LV A+++IG + AVD+ FKTC QSGFCKR R + Y + DS+ + L A +
Sbjct: 4 LVVAWLLIGALDAVDRQNFKTCEQSGFCKRHRAV-TSPTGYEVVGDSVKTNETGLHALIK 62
Query: 362 TIDAADEKRTVLIK 403
D V +K
Sbjct: 63 NKDTTLRLSIVALK 76
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical
protein F40F9.6a protein.
Length = 924
Score = 35.5 bits (78), Expect = 0.034
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Frame = +2
Query: 173 WALVLVAAFVIIGISAVDKNKFKTCSQSGFCKRLRPFK-------------PEKSQYSLN 313
W + ++ + + V ++ FKTC QS FCK+ R E + Y L
Sbjct: 7 WIVPIILLATPLAVQMVKRDDFKTCEQSAFCKQHRAITVRRGSQNHHNWSLQEPTGYELL 66
Query: 314 LDSILVHGNVLSAEV 358
DSI HG V +A V
Sbjct: 67 ADSITHHGAVWTANV 81
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical protein
M03C11.8 protein.
Length = 989
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 444 TQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDE 623
T G K + + L+ E ++ G + S+LL + R + VED+ GD N +D E
Sbjct: 901 TDGVKGQLDEDALR-ELKEEEGGEQCGGRDLSKLLSSAISGRYDDVEDDSGDSKNGIDAE 959
Query: 624 EGTWSETXPV 653
E E V
Sbjct: 960 EAAKKEDEAV 969
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 31.9 bits (69), Expect = 0.42
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 444 TQGHKVIITSEPLKLEFLDQNGEVAVVLNENSQLLVEPLRARREKVEDEDGDGANQLDDE 623
T G K + + L+ E ++ G + S+LL + R + VED+ GD N +D E
Sbjct: 901 TDGVKGQLDEDALR-ELKEEEGGEQCGGRDLSKLLSSAISGRYDDVEDDSGDSKNGIDAE 959
Query: 624 EGTWSETXPV 653
E E V
Sbjct: 960 EAAKKEDEAV 969
>AL032646-4|CAA21678.1| 237|Caenorhabditis elegans Hypothetical
protein Y54E2A.5 protein.
Length = 237
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 LVLVAAFVIIGISAVDKNKFKTCSQSGFCK-RLRPFK 286
LVL FV + SA D + C + FC+ RPFK
Sbjct: 3 LVLAVIFVFLTFSAADVDGDVQCGNNKFCRVGFRPFK 39
>AC024881-8|AAK71411.2| 318|Caenorhabditis elegans Serpentine
receptor, class t protein53 protein.
Length = 318
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -1
Query: 473 GCYDDFMPLRVDENNFSIVFRNQF*SKLFAFHPQRQW*P---PQRIERCREL 327
G Y ++ + NNFS+VF F F F +RQ+ P+R R R++
Sbjct: 187 GHYQEYTNIPHTINNFSLVFLTSFLYMFFCFKVRRQFRKSFRPKRTARQRQI 238
>Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical
protein R10D12.17 protein.
Length = 364
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 104 YLKGILLSVYDDIR*Q*KPKMKVWALVLVAAFVIIGISAVDKNKFKTCSQSGF 262
Y+ I+ S D++ ++ +W VL A +I + ++ N+F+ S GF
Sbjct: 86 YISRIVFSTGDNMS-----RLSIWLCVLFALVRVIVLQKINDNRFQILSAPGF 133
>AF003145-7|AAB57714.2| 352|Caenorhabditis elegans Serpentine
receptor, class z protein4 protein.
Length = 352
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 623 LIIQLISPITVFVLYLFPSRP*RLHEQLRVLVENDRYFSILVQEFEF 483
LII LIS I +F LY++ R R E+L ++F ++ +F
Sbjct: 25 LIIYLISIIVIFPLYVYVYRLNRKTEKLAYFYPITKHFYSVICSMQF 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,220
Number of Sequences: 27780
Number of extensions: 305678
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -