Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e03
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    60   2e-11
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.72 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
 Frame = +2

Query: 107 NKVVIITGASSGIGAETAYEFAKLNAKLVLTGRKKENLDNVASDCESQSPSKIKPLVVVA 286
           ++V ++TGA+SGIG            K++    + + +  +  + +S+ P K+ PL    
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSK-PGKLVPLQ--C 63

Query: 287 DMNNESDVENIIKKTVDNYHQLDVLVNNAGVLESGTIETTSLAQYDRIMNTNVRGPYYLT 466
           D++N++D+  +I+    N   +D+L+NNA +    T++   +  + +I + N+ G   + 
Sbjct: 64  DLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123

Query: 467 MLAIPHLIK---TKGNIVNVSSVTGLRSFP---NVLAYCISKSA 580
              +  + K     G IVN++  +GL   P   N  AY  SK A
Sbjct: 124 QEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCA 167


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = +2

Query: 377 VLESGTIETTSLAQYDRIMNTNVRGPYYLTMLAIPHLIKTKGNIVNVSSVTGLRSFPNVL 556
           VL+SG +  T      ++   ++     L  + IPH + T G    VS         N +
Sbjct: 142 VLDSGLVNNTQPMCSPKLFAFDLNTSQLLKQVEIPHDVATTGKGELVSLTVQAMDSTNTM 201

Query: 557 AYCI 568
            Y +
Sbjct: 202 VYMV 205


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 346 PIGCACK*C 372
           PIGC CK C
Sbjct: 432 PIGCECKTC 440


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 482 AELPTSS-NNKVREH*CSLFYRIEPKMLFLWYQIPKHQHYLQAHPIGD 342
           +ELP  S NN      C   Y  +   L  W Q+ KH ++++   + D
Sbjct: 94  SELPWGSCNNYWNTKNCVNPY--DRDSLSCWLQMTKHHNFIKVCSVND 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,739
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)