Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e01
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)                  31   0.86 
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            30   1.5  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.1  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  

>SB_25578| Best HMM Match : ShTK (HMM E-Value=2.4e-06)
          Length = 257

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 486 NWIDHTFEVLSKLSEVVYKN-DYKENFGMCELWK 584
           +W  H    L  +   V KN D +E FG+C++WK
Sbjct: 81  DWTKHPLFPLYPIDYTVCKNNDREEKFGLCKIWK 114


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNLST 359
           ++IV TL +  +L  DKLL  FS+ W +  +   HH   ST
Sbjct: 156 RFIVCTLAQDHIL--DKLLAHFSQGWLVRVHKLRHHEKAST 194


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 96  KIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREV 251
           K++ EL  NS +  KY+     K++HPS G I        ++  +  K+R V
Sbjct: 102 KLELELQQNSTKK-KYITLENAKQLHPSFGSIYSIQNATVLKSHDHEKVRVV 152


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/74 (20%), Positives = 40/74 (54%)
 Frame = +3

Query: 60   ERN*ENNEHKMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIK 239
            E+  +  E ++++++ EL D   +  K  + +   ++  S+ + +  L  + +E ++L+K
Sbjct: 1492 EKERDELESELNRLRKELADVRAQREK--LNVEKNDLKVSLHKTKSHLAEEEMENEKLVK 1549

Query: 240  IREVIALCCNQIKK 281
              E++ +   Q+KK
Sbjct: 1550 ENEILKVELEQLKK 1563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,544,287
Number of Sequences: 59808
Number of extensions: 324658
Number of successful extensions: 679
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)