BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10e01 (682 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 30 1.2 At5g16300.1 68418.m01905 expressed protein 25 1.5 At5g16300.2 68418.m01906 expressed protein 25 1.5 At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 3.8 At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 29 3.8 At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.0 At1g61320.1 68414.m06911 hypothetical protein 28 5.0 At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi... 28 5.0 At4g14310.2 68417.m02205 peroxisomal membrane protein-related co... 28 6.6 At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s... 27 8.7 At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 8.7 At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim... 27 8.7 >At1g13330.1 68414.m01547 expressed protein similar to nuclear receptor coactivator GT198 (GI:16506273) {Rattus norvegicus}; similar to TBP-1 interacting protein (GI:7328534) [Homo sapiens] Length = 226 Score = 30.3 bits (65), Expect = 1.2 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = +3 Query: 81 EHKMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIAL 260 + ++ + K + D E L ++EI ++RK +VK +EE+ L+K+RE I L Sbjct: 92 QEQLQEKKKTISDVESEIKSLQSNLTLEEIQEKDAKLRK--EVKEMEEK-LVKLREGITL 148 Query: 261 CCNQIKKCVVNL 296 + KK V ++ Sbjct: 149 VRPEDKKAVEDM 160 >At5g16300.1 68418.m01905 expressed protein Length = 1068 Score = 24.6 bits (51), Expect(2) = 1.5 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -1 Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122 S+I I S SS+ T ++P+ + I +KY VD+PE Sbjct: 91 SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136 Score = 23.8 bits (49), Expect(2) = 1.5 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365 + +V T + S D ++ + S C SI N+S H N+ Sbjct: 59 RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97 >At5g16300.2 68418.m01906 expressed protein Length = 1034 Score = 24.6 bits (51), Expect(2) = 1.5 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -1 Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122 S+I I S SS+ T ++P+ + I +KY VD+PE Sbjct: 91 SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136 Score = 23.8 bits (49), Expect(2) = 1.5 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365 + +V T + S D ++ + S C SI N+S H N+ Sbjct: 59 RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97 >At5g65770.1 68418.m08276 nuclear matrix constituent protein-related low similarity to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI:2190187 Length = 1042 Score = 28.7 bits (61), Expect = 3.8 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 513 LSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLSAM 650 ++KL VY DY+ N G+ L K+EL ++ ++DE L+ M Sbjct: 66 IAKLESEVY--DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHM 109 >At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Length = 1304 Score = 28.7 bits (61), Expect = 3.8 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 261 CCNQIKKCVVNLLGIF-KLEYNQGIFLQESR 350 C N+IK+C V LL ++ + EYNQ E R Sbjct: 1201 CSNRIKECGVRLLYVYQETEYNQQTTRSEKR 1231 >At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profiles PF03105: SPX domain, PF03124: EXS family Length = 745 Score = 28.3 bits (60), Expect = 5.0 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = -3 Query: 143 ILCRFSRVIRKLKFYFMHFMFIVFLIPFY 57 +LC F+ + R +F+F+ +F PFY Sbjct: 478 VLCPFNILYRSSRFFFLSVLFRCIAAPFY 506 >At1g61320.1 68414.m06911 hypothetical protein Length = 459 Score = 28.3 bits (60), Expect = 5.0 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 87 KMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKL-QVKHIEEQELIKIR 245 K+ KFE+PD+S + K L TL + + I H+E ELI+ R Sbjct: 153 KLRWCKFEIPDSSPKGLKLLKTLSLMRTQVMVKTIDAIFNNCIHLESLELIECR 206 >At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 738 Score = 28.3 bits (60), Expect = 5.0 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +3 Query: 504 FEVLSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLS 644 F+V S LS Y+ D+ E + E WKSE + + D+ + DEL +S Sbjct: 693 FQVYSLLSR--YRGDFSEFRSVFEKWKSEFTENV-DVSDSDDELFVS 736 >At4g14310.2 68417.m02205 peroxisomal membrane protein-related contains weak similarity to Peroxisomal membrane protein 2 (22 kDa peroxisomal membrane protein) (Swiss-Prot:P42925) [Mus musculus] Length = 965 Score = 27.9 bits (59), Expect = 6.6 Identities = 8/38 (21%), Positives = 20/38 (52%) Frame = -1 Query: 262 HSAITSRILINSCSSMCLTCNFFRISPILGCISLIKSV 149 + S ++N C+S+ + + ++ + G + +KSV Sbjct: 546 YDVANSEFMVNECNSLSIWVRLYEVTGVFGFVHYVKSV 583 >At4g30640.1 68417.m04345 F-box family protein (FBL19) contains similarity to SKP1 interacting partner 1 GI:10716947 from [Arabidopsis thaliana] Length = 301 Score = 27.5 bits (58), Expect = 8.7 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -1 Query: 307 NIPRRFTTHFFI*LQHSAIT-SRILINSCSSMCLTCNFFRISPILGCISLIKSVI 146 NI R + L+H I S + S+C C+ + GCISL +S I Sbjct: 211 NIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSDI 265 >At4g18670.1 68417.m02762 leucine-rich repeat family protein / extensin family protein similar to extensin-like protein [Lycopersicon esculentum] gi|5917664|gb|AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 Length = 839 Score = 27.5 bits (58), Expect = 8.7 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Frame = +3 Query: 93 HKIKFELPDNSGESTKYLITLLIKEIH----PSIGEIRKKLQVKHIE 221 ++ +FELPDN G+S +I + H S+G++R ++ +E Sbjct: 231 NRFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFME 277 >At3g10690.1 68416.m01286 DNA gyrase subunit A family protein similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3). {Clostridium acetobutylicum}; contains Pfam profiles PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989: DNA gyrase C-terminal domain beta-propeller Length = 950 Score = 27.5 bits (58), Expect = 8.7 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -2 Query: 450 LYCH*TNYCFFFQDVGLLYLICLCTIPISLRDIGGFP 340 L CH ++ FF D G++Y IP R+ G P Sbjct: 644 LVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTP 680 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,505,650 Number of Sequences: 28952 Number of extensions: 238523 Number of successful extensions: 629 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 617 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 629 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1438152744 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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