SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10e01
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13330.1 68414.m01547 expressed protein similar to nuclear re...    30   1.2  
At5g16300.1 68418.m01905 expressed protein                             25   1.5  
At5g16300.2 68418.m01906 expressed protein                             25   1.5  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    29   3.8  
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR...    29   3.8  
At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 fam...    28   5.0  
At1g61320.1 68414.m06911 hypothetical protein                          28   5.0  
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    28   6.6  
At4g30640.1 68417.m04345 F-box family protein (FBL19) contains s...    27   8.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    27   8.7  
At3g10690.1 68416.m01286 DNA gyrase subunit A family protein sim...    27   8.7  

>At1g13330.1 68414.m01547 expressed protein similar to nuclear
           receptor coactivator GT198 (GI:16506273) {Rattus
           norvegicus}; similar to TBP-1 interacting protein
           (GI:7328534) [Homo sapiens]
          Length = 226

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/72 (29%), Positives = 38/72 (52%)
 Frame = +3

Query: 81  EHKMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKLQVKHIEEQELIKIREVIAL 260
           + ++ + K  + D   E       L ++EI     ++RK  +VK +EE+ L+K+RE I L
Sbjct: 92  QEQLQEKKKTISDVESEIKSLQSNLTLEEIQEKDAKLRK--EVKEMEEK-LVKLREGITL 148

Query: 261 CCNQIKKCVVNL 296
              + KK V ++
Sbjct: 149 VRPEDKKAVEDM 160


>At5g16300.1 68418.m01905 expressed protein 
          Length = 1068

 Score = 24.6 bits (51), Expect(2) = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122
           S+I   I   S SS+  T     ++P+   +  I   +KY VD+PE
Sbjct: 91  SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136



 Score = 23.8 bits (49), Expect(2) = 1.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365
           + +V T     + S D ++ + S C SI  N+S  H N+
Sbjct: 59  RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97


>At5g16300.2 68418.m01906 expressed protein 
          Length = 1034

 Score = 24.6 bits (51), Expect(2) = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 259 SAITSRILINSCSSMCLTCNFFRISPILGCISLIKSVIKYFVDSPE 122
           S+I   I   S SS+  T     ++P+   +  I   +KY VD+PE
Sbjct: 91  SSIHGNIRSLSSSSVAETPKLASLNPVRVNVYGIACRVKYLVDTPE 136



 Score = 23.8 bits (49), Expect(2) = 1.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 481 KYIVVTLIESSVLSLDKLLFLFSRCWSIVFNLSMHHSNL 365
           + +V T     + S D ++ + S C SI  N+S  H N+
Sbjct: 59  RQLVGTRYRDLIDSADSIVHMKSLCESISANISSIHGNI 97


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 513 LSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLSAM 650
           ++KL   VY  DY+ N G+  L K+EL     ++  ++DE  L+ M
Sbjct: 66  IAKLESEVY--DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHM 109


>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1304

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 261  CCNQIKKCVVNLLGIF-KLEYNQGIFLQESR 350
            C N+IK+C V LL ++ + EYNQ     E R
Sbjct: 1201 CSNRIKECGVRLLYVYQETEYNQQTTRSEKR 1231


>At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 745

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 143 ILCRFSRVIRKLKFYFMHFMFIVFLIPFY 57
           +LC F+ + R  +F+F+  +F     PFY
Sbjct: 478 VLCPFNILYRSSRFFFLSVLFRCIAAPFY 506


>At1g61320.1 68414.m06911 hypothetical protein
          Length = 459

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 87  KMHKIKFELPDNSGESTKYLITLLIKEIHPSIGEIRKKL-QVKHIEEQELIKIR 245
           K+   KFE+PD+S +  K L TL +      +  I        H+E  ELI+ R
Sbjct: 153 KLRWCKFEIPDSSPKGLKLLKTLSLMRTQVMVKTIDAIFNNCIHLESLELIECR 206


>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +3

Query: 504 FEVLSKLSEVVYKNDYKENFGMCELWKSELLQILSDLHLAIDELLLS 644
           F+V S LS   Y+ D+ E   + E WKSE  + + D+  + DEL +S
Sbjct: 693 FQVYSLLSR--YRGDFSEFRSVFEKWKSEFTENV-DVSDSDDELFVS 736


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = -1

Query: 262 HSAITSRILINSCSSMCLTCNFFRISPILGCISLIKSV 149
           +    S  ++N C+S+ +    + ++ + G +  +KSV
Sbjct: 546 YDVANSEFMVNECNSLSIWVRLYEVTGVFGFVHYVKSV 583


>At4g30640.1 68417.m04345 F-box family protein (FBL19) contains
           similarity to SKP1 interacting partner 1 GI:10716947
           from [Arabidopsis thaliana]
          Length = 301

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 307 NIPRRFTTHFFI*LQHSAIT-SRILINSCSSMCLTCNFFRISPILGCISLIKSVI 146
           NI  R    +   L+H  I  S +      S+C  C+      + GCISL +S I
Sbjct: 211 NIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSDI 265


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 93  HKIKFELPDNSGESTKYLITLLIKEIH----PSIGEIRKKLQVKHIE 221
           ++ +FELPDN G+S   +I +     H     S+G++R   ++  +E
Sbjct: 231 NRFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDMRNLEEIIFME 277


>At3g10690.1 68416.m01286 DNA gyrase subunit A family protein
           similar to SP|P94605 DNA gyrase subunit A (EC 5.99.1.3).
           {Clostridium acetobutylicum}; contains Pfam profiles
           PF00521: DNA gyrase/topoisomerase IV A subunit, PF03989:
           DNA gyrase C-terminal domain beta-propeller
          Length = 950

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 450 LYCH*TNYCFFFQDVGLLYLICLCTIPISLRDIGGFP 340
           L CH  ++  FF D G++Y      IP   R+  G P
Sbjct: 644 LVCHAHDHVLFFSDRGIVYSTRAYKIPECSRNAAGTP 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,650
Number of Sequences: 28952
Number of extensions: 238523
Number of successful extensions: 629
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -