Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d23
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128...    29   4.2  
12_02_0947 + 24680119-24681497,24682213-24682275,24683380-246842...    28   5.6  
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006...    28   7.4  
02_02_0612 - 12142192-12143253                                         28   7.4  

>02_02_0620 +
           12210812-12210997,12212397-12212474,12212744-12212848,
           12212998-12213022,12213214-12213266,12213523-12213635,
           12213777-12213801,12214560-12214601,12214666-12214726,
           12216027-12216043,12217143-12217257,12217431-12218659
          Length = 682

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 239 RTQEICVRRLL*QFHNSLLTTSLRYTECFRSFGLQSSCF*FNSS*TRL 382
           R + IC  +L     +S++ TSL   E     GL+ +CF F +S + L
Sbjct: 591 RLKLICEEKLCESIDSSMVATSLALAEQHNCNGLKEACFEFLASPSNL 638


>12_02_0947 +
           24680119-24681497,24682213-24682275,24683380-24684239,
           24684399-24684772,24685932-24686112,24686201-24686220
          Length = 958

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 342 KVVASSSTAVKQDYNEYMWTMRKEFSEPEPSIIVEQDNITNFSKE 476
           K   SS+ +  Q  + +  TM    +EP    +VE  NI+  SKE
Sbjct: 849 KASFSSNASYPQGGDLWQGTMANHSAEPSKHFVVESSNISEQSKE 893


>08_02_0052 +
           11699468-11699700,11699799-11699916,11699991-11700659,
           11700741-11700842,11700921-11701181,11701838-11702009,
           11702128-11702528,11703171-11703587
          Length = 790

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +3

Query: 399 TMRKEFSEPEPSIIVEQDNITNFSKEAMHLSNYHSNKDDEV*TLLYFKIKLD*GINNMES 578
           T  K+F   E   +++++N     KE   L N   N       L  F I      N M +
Sbjct: 114 TKMKKFKNNEERKLLQKEN-EELKKENAELRNRMKNSTCRACDLPLFHIDCRHWENPMLN 172

Query: 579 KGSQNVLSNLLNAPIAPI 632
           KG+  V SNL+   ++ +
Sbjct: 173 KGNHGVTSNLIPQAVSSL 190


>02_02_0612 - 12142192-12143253
          Length = 353

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 239 RTQEICVRRLL*QFHNSLLTTSLRYTECFRSFGLQSSCF*FNSS*TRL 382
           R + IC  +L     ++++ T+L   E    +GL+ +CF F +S + L
Sbjct: 273 RLKLICEEKLSKHIDSNMVATTLALAEQHSCYGLKEACFEFLASRSNL 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,219
Number of Sequences: 37544
Number of extensions: 251233
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)