Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d23
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.63 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   1.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.9  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 147 PYILIRGNLASYGHKNPWRVLVSGLKAEDIEELKRFACGGYC 272
           P++ +R  +A      P  +L       D E  K F C GYC
Sbjct: 423 PFVYVR-EIAFSESCLPEEILCPHFNVTDGETTKTFCCKGYC 463


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 426 EPSIIVEQDNITNFSKEAMHLSNYHSNKDDEV*TLLYFKI 545
           EP II   ++++N      + +NY++N +     L Y+ I
Sbjct: 78  EPKIISNNNSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNI 117


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 204 PCVLISSMALLGFTLPPDS 222


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 272 PCVLISSMALLGFTLPPDS 290


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV++S++ +LG+ +   S
Sbjct: 272 PCVLISSMALLGFTLPPDS 290


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 303 PCVILSALEVLGYKVVASS 359
           PCV+++++ VLG+ +   S
Sbjct: 241 PCVLIASMAVLGFTLPPDS 259


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = +2

Query: 38  IVPLVNLYFVNKLFI*TFIVQWKQIFFLSV 127
           ++ LV L  +++L    ++ QW++++FL++
Sbjct: 213 LLSLVRLLRLSRLV--RYVSQWEEVYFLNM 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,831
Number of Sequences: 438
Number of extensions: 3263
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)