Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d21
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56160.1 68414.m06452 myb family transcription factor (MYB72)...    31   0.77 
At1g34670.1 68414.m04311 myb family transcription factor similar...    30   1.3  
At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5) M...    27   7.2  
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    27   7.2  

>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA putative transcription factor
           (MYB72) mRNA, partial cds GI:3941501
          Length = 296

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 259 ASVCGLDRLRPSPWTPSWVLSRVSFCHLHG-QTWLYAETLIKLLNRC 122
           A  C  ++++  PW+P   L+ ++F   HG Q W     L  LL RC
Sbjct: 6   APCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLL-RC 51


>At1g34670.1 68414.m04311 myb family transcription factor similar to
           myb-related protein mixta GI:485867 from [Antirrhinum
           majus]
          Length = 365

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 250 CGLDRLRPSPWTPSWVLSRVSFCHLHGQTWLYAETLIKLLNRC 122
           C  + L+  PWTP      + + H HG     A   +  LNRC
Sbjct: 7   CDENGLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRC 49


>At5g51710.1 68418.m06413 K+ efflux antiporter, putative (KEA5)
           Monovalent cation:proton antiporter family 2 (CPA2
           family) member, PMID:11500563; related to
           glutathione-regulated potassium-efflux system protein
           [Escherichia coli] GP|606284|gb|AAA58147
          Length = 568

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 455 KHNNIHIVLNSQTRYKILQLKLR 387
           K NN+ ++ N +++Y ILQ+ LR
Sbjct: 131 KKNNVFVMSNKKSKYPILQVDLR 153


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = +1

Query: 406 ILYLVWLFNTICILLCLQKID 468
           +++++WL+N +C+LL    +D
Sbjct: 6   LVFVIWLYNCLCLLLLSSLVD 26


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,638,607
Number of Sequences: 28952
Number of extensions: 184521
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)