Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d19
(540 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0) 188 2e-48
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 34 0.085
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41) 28 4.2
SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8) 28 4.2
SB_58892| Best HMM Match : IncA (HMM E-Value=1.3) 28 5.6
SB_32771| Best HMM Match : IncA (HMM E-Value=1.4) 28 5.6
SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7) 27 7.4
SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1) 27 7.4
SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7) 27 9.8
SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4) 27 9.8
SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 27 9.8
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 27 9.8
>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
Length = 600
Score = 188 bits (459), Expect = 2e-48
Identities = 91/164 (55%), Positives = 116/164 (70%), Gaps = 1/164 (0%)
Frame = +1
Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231
K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+ R LRPIVRCPT
Sbjct: 4 KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63
Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411
+Y+TKVRAGRGFTL E++AAG+ A TIGIAVD RR+N+S ESLQ NVQR+KEY+++
Sbjct: 64 FKYNTKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHRRKNRSAESLQANVQRLKEYKSK 123
Query: 412 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVAR 540
LI+FP K K +G++ + A QL+GP+MP+ Q + AR
Sbjct: 124 LIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVPIKAR 167
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 33.9 bits (74), Expect = 0.085
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 328 IAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 486
IA+ R + + + RI+E R ++F GK V G +EE+ KLA +
Sbjct: 301 IALQARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = -1
Query: 177 GLSFLYSILLSAVSSSWLVKPSFNKSLPILVEMSIRYHIIPLAHFDVGVLPRQRKKK 7
G F +IL+ A SS L++P F+ SLP+ + + L H P +RK K
Sbjct: 195 GFDFGKAILVKASLSSDLIRPGFDVSLPLFPKTHPHKDLGNLPH-SCSAFPLERKYK 250
>SB_47063| Best HMM Match : APOBEC_C (HMM E-Value=0.41)
Length = 430
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R +L+W++ G +
Sbjct: 375 KGSWVALTVESSTLANPNILLARIQNLMPGRKASLLWFKATGKK 418
>SB_16060| Best HMM Match : Protamine_P1 (HMM E-Value=7.8)
Length = 91
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +1
Query: 313 ARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEANEEERKLAT 483
AR I +A+ RR + S+Q + EY R KG+KV KG +ERK A+
Sbjct: 17 ARRIRLAIFSRRLKFARTSVQNRQRNQAEYSER-----KGRKVRKGRKVRKERKPAS 68
>SB_58892| Best HMM Match : IncA (HMM E-Value=1.3)
Length = 449
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 176 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 226
>SB_32771| Best HMM Match : IncA (HMM E-Value=1.4)
Length = 318
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHRTIGRNGP 198
+GS V +T NP L++R N +P R +L+W++ + + + P
Sbjct: 66 KGSWVALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEKGLKSDNP 116
>SB_18936| Best HMM Match : Glyco_hydro_67N (HMM E-Value=7)
Length = 154
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS A V +T NP L++R N +P R +L+W++ +
Sbjct: 60 KGSWAALTVEGSTLANPNILLARIQNLMPGRKASLLWFKATAEK 103
>SB_6638| Best HMM Match : CaMBD (HMM E-Value=5.1)
Length = 165
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V ++T NP L++R N +P R L+W++ G +
Sbjct: 110 KGSWVALTVESSTLANPNILLARIQNLMPGRKALLLWFKATGKK 153
>SB_59285| Best HMM Match : SecIII_SopE_N (HMM E-Value=3.7)
Length = 204
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V +T NP+ L++R N +P R +L+W++ +
Sbjct: 110 KGSWVALTVEGSTLANPSILLARIQNLMPGRKASLLWFKATAEK 153
>SB_55508| Best HMM Match : Glyco_hydro_67N (HMM E-Value=5.4)
Length = 154
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 344 RGSTAIPIVRANTGFNPAALISRRVNPLPAR--TLVWYRTVGHR 219
+GS V +T NP+ L++R N +P R +L+W++ +
Sbjct: 60 KGSWVALTVEGSTLANPSILLARIQNLMPGRKASLLWFKATAEK 103
>SB_52261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.1 bits (57), Expect = 9.8
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +1
Query: 238 YHTKVRA--GRGFTLREIRAAG 297
YHTK A GRG TL IRA G
Sbjct: 519 YHTKKSAHQGRGITLSSIRAGG 540
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 198 SCRTWSYGLSFLYSILLSAVSSSWLV 121
SCRTW SF+ +L AV S+ L+
Sbjct: 199 SCRTWICSTSFMSPSILVAVGSAVLI 224
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 300 QSCGPNFTKSESSTGAYFSMVPNSWASHYRT*RP 199
+ C P +T++ + GAY VP S +H T P
Sbjct: 1173 ERCAPGYTRATPNGGAYTPCVPCSCNNHTDTCDP 1206
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 198 SCRTWSYGLSFLYSILLSAVSSSWLV 121
SCRTW SF+ +L AV S+ L+
Sbjct: 137 SCRTWICSTSFMSPSILVAVGSAVLI 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,510,541
Number of Sequences: 59808
Number of extensions: 328711
Number of successful extensions: 963
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -