BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov10d19 (540 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 169 8e-43 U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 94 5e-20 Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical pr... 29 2.8 U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical pr... 27 6.5 U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical pr... 27 6.5 >U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein, large subunitprotein 13, isoform a protein. Length = 207 Score = 169 bits (412), Expect = 8e-43 Identities = 79/154 (51%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Frame = +1 Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231 +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63 Query: 232 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 411 RY+TK R GRGF+L+E++AAG++ ARTIGIAVD RR NK+ E L+ N R+KEY+A+ Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123 Query: 412 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPV 510 LILFP K KG+++ EE K+A QLRG ++P+ Sbjct: 124 LILFPKKASAPKKGDSSAEELKVAAQLRGDVLPL 157 >U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein, large subunitprotein 13, isoform b protein. Length = 88 Score = 94.3 bits (224), Expect = 5e-20 Identities = 41/84 (48%), Positives = 54/84 (64%) Frame = +1 Query: 52 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPT 231 +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR +VRCP Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63 Query: 232 VRYHTKVRAGRGFTLREIRAAGLN 303 RY+TK R GRGF+L+E++AA N Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87 >Z82083-6|CAB04974.1| 388|Caenorhabditis elegans Hypothetical protein ZK1010.8 protein. Length = 388 Score = 28.7 bits (61), Expect = 2.8 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%) Frame = -2 Query: 188 RGAT-ALAFF-ILFCFLRYRRAGWLNQVLTNL 99 RGAT A+A + I++CF+++ GW QV+ N+ Sbjct: 9 RGATIAIAVWNIIYCFIQFGILGWQFQVVKNI 40 >U41535-2|AAB63402.1| 731|Caenorhabditis elegans Hypothetical protein F18A1.6a protein. Length = 731 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 430 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 525 GK + NEE+R+LA LR + PAP Sbjct: 206 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 237 >U41535-1|AAK67247.1| 734|Caenorhabditis elegans Hypothetical protein F18A1.6b protein. Length = 734 Score = 27.5 bits (58), Expect = 6.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 430 GKKVLKGEANEEERKLATQLRGPLMPVQQPAP 525 GK + NEE+R+LA LR + PAP Sbjct: 209 GKLLASKYPNEEDRELAEYLRDKIASTSTPAP 240 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,312,008 Number of Sequences: 27780 Number of extensions: 255534 Number of successful extensions: 637 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 634 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1081316076 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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