Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d18
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    28   0.95 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   2.9  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   3.8  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    26   3.8  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   5.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.1  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    26   5.1  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   5.1  
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    25   6.7  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    25   6.7  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   6.7  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   8.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   8.9  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   8.9  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   8.9  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 200 TLTGVSPLITNERLNESLTKWFGEETTFTHWEYVGDTGKGDSYLSELIR 346
           T+T  S   +N R  ES+T   G    + +WE++  T KG+S++   IR
Sbjct: 294 TVTDDSTSPSNYRFIESVT--CGTPFVYENWEWIPVTIKGNSFMLNQIR 340


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 169 KAKQNGRRLQNVDRRVSSHHQRETERISNQMVR*GNNLHPLGVCRRHRQG*FLPQRVDSH 348
           K K   +R ++ +R+     +   ++I  Q  R  + LH  G    H  G    ++VD  
Sbjct: 519 KTKLENQR-RDKERQEELRRKEAMQKIEEQSKRDYDKLHGEG----HSLGINNVRKVDEL 573

Query: 349 QNLRPEFKQRVE 384
           Q+L PE + R+E
Sbjct: 574 QSLSPEMRMRIE 585


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 417 KTYLGA*RSAAMSSSITRSVSTRKSYL-NYQSSEPQKAPMNRSTNARNCYSHTS 575
           K+Y  +  S+A SSS + S+S    Y   Y S+ P  A  N  ++  + Y ++S
Sbjct: 112 KSYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSS 165


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 255 PNGSVRKQPSPIGSMSATPAR 317
           P+G+    PSPI S+ + P+R
Sbjct: 142 PHGNTSNHPSPISSLESLPSR 162


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 293 EYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSR 430
           E  GD  KG S +       I G N + +S H+Q + KSI K  +R
Sbjct: 5   EAEGDILKGKSRIL-FPGTYIVGRNVSDDSSHIQVISKSISKRHAR 49


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 441 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTS 593
           S++ SSS + S S+  S  +  SS     P+  ST++    SH+S+ S +S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS----SHSSSSSSSS 226


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 350 KIYGLN--SNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEIS 475
           ++YG++   NK+ +  +  L    K   R++      FF+NEIS
Sbjct: 264 RVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 483 RKSYLNYQSSEPQKAPMNRSTNAR-NCYSHTSTGSMTSFV 599
           R   L+  +SE  K    R   A  NC++HTS  S+ SF+
Sbjct: 660 RLEQLSEFNSEKFKTVSKREVEALVNCFNHTSFTSLLSFL 699


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 236 RLNESLTKWFGEETTFTHWEYVGDTGKGDSYLSELIR 346
           +L+  L  W   +  F H+   GD GK D +++ L+R
Sbjct: 214 QLSSPLGGW--RDRKFKHFIEGGDAGKRDEHINSLVR 248


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 618 YIDSSSKQMTSWTPSTYENNNFGHLSNGS 532
           Y     +Q  S TP+ Y N+N GH S  S
Sbjct: 21  YAKPQPRQPASPTPTAYLNSNDGHSSAAS 49


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 492 YLNYQSSEPQKA 527
           YLNYQ +EP+KA
Sbjct: 321 YLNYQENEPEKA 332


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 194 FKTLTGVSPLITNERLNESLTKWFGEETTFTHWEYVGDTGKGDSYLSEL 340
           F  +  +SP+ TN  L ESL K +        +   GD  KG +   +L
Sbjct: 136 FVHMDNISPVTTNGSLKESLRK-YSSIIAVNIFSETGDLKKGIAIFQDL 183


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 333 LR*ESPLPVSPTYSQWVKVVSSPNHLVRDSFS--LSLVMRGDTPVNVLKSSA 184
           L+ +SP+P + +YS  ++   SP+    DS S  + +    DT V   K+ A
Sbjct: 423 LQPKSPIPATKSYSATIQTPRSPSLRRADSTSHIIKVPHLPDTSVKTAKTGA 474


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 426 LGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMN 536
           LG  RSA+M S    +++   +Y ++ S   +++P+N
Sbjct: 306 LGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLN 342


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 471 SVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWKTNR 614
           S   +K   +Y +  P KAP+ +S  + +  SH  T S  + V +  R
Sbjct: 64  SSPVKKQKASYSNKSPNKAPIQKSRGS-SLKSHLETESQQTPVKRRRR 110


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 395 CVLKSIPKNVSRRL-TFRSNEFFYNEISFYEKVLPELSKFRASKSANEPFDKC 550
           C LKSIPKNV   L +  S +   NE++     L EL +  +   A+     C
Sbjct: 342 CKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGC 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,054
Number of Sequences: 5004
Number of extensions: 46356
Number of successful extensions: 174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)