Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d18
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    30   1.3  
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391...    30   1.7  
05_05_0200 - 23171803-23171906,23172304-23173951                       27   9.2  

>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 142 FLNIIQILFKAKQNGRRLQNVDRRVSSHHQRE 237
           +L+++    + KQ GR L+ VD+R+ SH+ +E
Sbjct: 816 YLHLLDWAERLKQEGRLLEIVDQRLGSHYSQE 847


>04_04_1054 +
           30437468-30437763,30438647-30438779,30439099-30439159,
           30439370-30439483,30439813-30439971,30440124-30440206,
           30440423-30440549,30440872-30440951,30441027-30441113,
           30441316-30441440,30441543-30441603,30441806-30441859,
           30441946-30442023,30442449-30442554,30442655-30442803,
           30442945-30443052
          Length = 606

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 441 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFV 599
           +A  SS +T   + R  +L     +P+++P N S    +CY+H  +GS  +++
Sbjct: 510 TACSSSQLTTLQNFRTDFLA-ALPKPEQSPANLSIFIDSCYAHCQSGSQDTWL 561


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 321 SPLPVSPTYSQWVKVVSSPNHLVRDSFSLSLVMRGDTPV 205
           SPL  SPT         +P+ L RD F ++L + G  P+
Sbjct: 525 SPLGGSPTMGDRTMKAPTPSVLHRDGFDINLFIIGTEPM 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,963
Number of Sequences: 37544
Number of extensions: 269432
Number of successful extensions: 743
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)