Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d18
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 62  LSLTHYKQTTHSLPISNCF 6
           +SLT ++Q  H L ++ C+
Sbjct: 228 ISLTTHQQKRHKLRVTRCY 246


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 323 SYLSELIRIKIYGLNSN 373
           +YLS   RI  Y +NSN
Sbjct: 445 AYLSRSERINYYNVNSN 461


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 16/76 (21%), Positives = 33/76 (43%)
 Frame = +1

Query: 187 RRLQNVDRRVSSHHQRETERISNQMVR*GNNLHPLGVCRRHRQG*FLPQRVDSHQNLRPE 366
           RRL + D+R+S     +  +  +Q +    + HP        Q    PQ+    Q  +P+
Sbjct: 789 RRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHP------QAQAQAQPQQQQQQQQQQPQ 842

Query: 367 FKQRVEARPVRIKEHP 414
            +Q+ + +  + +  P
Sbjct: 843 QQQQQQQQQQQQQRGP 858


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 255 PNGSVRKQPSPIGSMSAT 308
           PN +VRK  SPI    A+
Sbjct: 584 PNSAVRKCMSPINGSGAS 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,757
Number of Sequences: 438
Number of extensions: 2992
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)