Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d18
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47500.1 68418.m05865 pectinesterase family protein contains ...    29   3.3  
At1g76780.1 68414.m08935 expressed protein ; expression supporte...    28   4.4  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    28   4.4  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   4.4  
At1g33170.1 68414.m04096 dehydration-responsive family protein s...    28   4.4  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    27   7.7  

>At5g47500.1 68418.m05865 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 362

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 362 LNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNE 469
           LN + + + VQ  + SIPKN ++ +T +    FY E
Sbjct: 65  LNGHAQFRSVQDAVDSIPKNNNKSITIKIAPGFYRE 100


>At1g76780.1 68414.m08935 expressed protein ; expression supported by
            MPSS
          Length = 1871

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = +1

Query: 151  IIQILFKAKQNGRRLQNVDRRVSSHHQRETERISNQMVR*G 273
            I ++L +A  N R+ +  +  V++  + ETER+S++ V+ G
Sbjct: 980  IQELLMEAGHNDRKEEEQNENVTAEVELETERVSSKKVQEG 1020


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/54 (27%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 329 LSELIRIKIYGLNSNKESKHV---QCVLKSIPKNVSRRLTFRSNEFFYNEISFY 481
           L  ++++++ G  S ++S+ +   +  L+ I  +V+ RLTFR+  +  +EI+ Y
Sbjct: 417 LVHILKVEVLGDQSARQSEPLAGLRPTLQRILADVNERLTFRARTYIRDEIANY 470


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 353  IYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEI 472
            +Y  N+++ S+H    LK+  K + R++ FRS+   Y ++
Sbjct: 3226 LYSGNNDESSEHTLSKLKTEHKRLQRKVIFRSDPKKYQDL 3265


>At1g33170.1 68414.m04096 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 639

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 449 NEFFYNEISFYEKVLPELS--KFRASKSANEPFDKCPKLLFSYVDGVHDVICLEDE 610
           NE +   IS+Y++++PELS  +FR     N         +  Y   V +V+ ++ E
Sbjct: 468 NEVWKERISYYKQIMPELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAE 523


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 346 ANQLAEVG--ITLAGVADILPMGEGCFLTEP 260
           +N L EVG  ITLA +A+IL    G F+  P
Sbjct: 699 SNALMEVGPSITLASLAEILAFAVGAFIKMP 729


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,060
Number of Sequences: 28952
Number of extensions: 232461
Number of successful extensions: 686
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)