Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d17
         (560 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   3.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.1  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 435 ETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMS 551
           +TLG   N I EP+ +     T K ++  A AP   D++
Sbjct: 380 QTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLT 418


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -2

Query: 403 ESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIGGRLSS 245
           E++T CP  K +V     V++  +   W T+ +   D   T+   +IG ++S+
Sbjct: 122 ENTTNCPEQKNTVTVTFTVQSDDTTLNWGTNESYNLD--LTTTGNQIGVQISA 172


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 20  PIFQTEQLISENVGGNKSSWKRHF 91
           P +QT+ L+S + GG   S+   F
Sbjct: 188 PTYQTQGLLSPSYGGTTYSFTADF 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,588
Number of Sequences: 336
Number of extensions: 2930
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13786212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)