Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d16
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0217 + 15814303-15814905 34 0.053
08_01_0534 - 4635122-4635380,4635716-4635837 32 0.28
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 30 1.1
11_06_0480 - 24081075-24081723,24083427-24084202 29 2.6
05_06_0278 + 26894802-26895362 28 4.6
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 4.6
09_02_0252 - 6315834-6315959,6316074-6317018 27 6.1
02_03_0097 + 15166077-15166349,15166623-15166694,15166715-151671... 27 6.1
01_06_1570 + 38312319-38314259 27 8.1
01_06_1106 + 34563368-34563679 27 8.1
>12_02_0217 + 15814303-15814905
Length = 200
Score = 34.3 bits (75), Expect = 0.053
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 6 SGSAAGLCQGTRVQRDRPNMWLGSRGPGATAG 101
+ AAG CQ R +R +WLGS G G T G
Sbjct: 166 AAGAAGFCQRRRRERRSATVWLGSSGRGKTEG 197
>08_01_0534 - 4635122-4635380,4635716-4635837
Length = 126
Score = 31.9 bits (69), Expect = 0.28
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +2
Query: 8 GQRSGTVPGYPRAT-RPPQHV----AGVAWARCDGRRRPATSLGLWTGRATDVTR 157
GQR G P + R Q V +GV W C GR +++G WTG A + TR
Sbjct: 46 GQRGGGSPAAQLSVAREWQRVEGDGSGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 1 GTRAAQRDCARVPACNATAPTCGWGRVGPVRRPAASSDV 117
G+ +Q D +V + + A TC WGR VRR SD+
Sbjct: 476 GSTDSQSDEMKVDSEDKPAGTCKWGRAFSVRRRKKLSDI 514
>11_06_0480 - 24081075-24081723,24083427-24084202
Length = 474
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 129 QRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVP 19
+RP ++ RR S + + PA+C GGRV +VP
Sbjct: 62 RRPHLLSLRRPSSSSSSSVPASCGGGRVDGDLTASVP 98
>05_06_0278 + 26894802-26895362
Length = 186
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 14 RSGTVPGYPRATRPPQHVAGVAWARCDGRRRPATSLGLWTGRATDVTRLDDSRP 175
RSG P P++ RP +AGV GR T G +T DD +P
Sbjct: 75 RSGGAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGSTKPLSDDDGKP 128
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -3
Query: 102 RRPSHRAHATPATCWGGRVARGYPG---TVPLR 13
R P RA + PAT G R +R PG +VP R
Sbjct: 224 RSPGRRADSVPATASGERASRQQPGKMVSVPAR 256
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -3
Query: 141 ARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPG-TVPLR---CPSA 1
A P + AG R HR+ + PA RGYP P R CPS+
Sbjct: 104 ANPRASAAAAAGTPRALHRSTSGPAAAAASTARRGYPRMPTPARAASCPSS 154
>02_03_0097 +
15166077-15166349,15166623-15166694,15166715-15167161,
15167579-15167794,15167873-15168213,15168329-15168947
Length = 655
Score = 27.5 bits (58), Expect = 6.1
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 129 QRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVP 19
+RP V G P + H T GGRV RG+ T P
Sbjct: 233 KRPMKVDGNHFPVNMVHTAGRTADGGRV-RGFQKTKP 268
>01_06_1570 + 38312319-38314259
Length = 646
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 80 TRPQPHVGAVALHAGTLAQSRC 15
+RP+P+VG+V G LA++ C
Sbjct: 290 SRPRPNVGSVLFSLGELAKATC 311
>01_06_1106 + 34563368-34563679
Length = 103
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 112 RWTPPAVAPGPRDPSHMLGRSRCTRVPWH--SPAAL 11
R P A AP P + H G +RC R PW PA L
Sbjct: 37 RVPPSASAPPPAELRH--GPNRCRRPPWRRLQPARL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,156
Number of Sequences: 37544
Number of extensions: 262543
Number of successful extensions: 1021
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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