Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d16
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.76 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.76 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 153  VTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLRC 10
            VT   R  +  S     + P++R  A   T +GG V R + G+  L C
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPTNRVPAR-ITSFGGHVVRPWRGSATLAC 1335


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 153  VTSVARPVQRPSDVAGRRRPSHRAHATPATCWGGRVARGYPGTVPLRC 10
            VT   R  +  S     + P++R  A   T +GG V R + G+  L C
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPTNRVPAR-ITSFGGHVVRPWRGSATLAC 1331


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 130 DWPRY*RDSPR 162
           +WP Y RD P+
Sbjct: 544 EWPSYSRDEPK 554


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 319 YGHSSNDVVLKIPIASFVELLNIAR 393
           YG   NDV  +I IA+  +L+   R
Sbjct: 388 YGFDFNDVNFRILIANVNDLIKNTR 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,703
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)