Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d16
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76130.1 68414.m08841 alpha-amylase, putative / 1,4-alpha-D-g...    28   2.9  
At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger) fa...    27   6.8  
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family...    27   9.0  
At1g20060.1 68414.m02511 kinesin motor protein-related                 27   9.0  

>At1g76130.1 68414.m08841 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative strong
           similarity to alpha-amylase GI:7532799 from [Malus x
           domestica];contains Pfam profile PF00128: Alpha amylase,
           catalytic domain
          Length = 413

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 65  VAGVAWARCDGRRRPATSLGLWTGRATDVTRLDD 166
           V G  W  CD + +P   +G W  RA  VT LD+
Sbjct: 267 VKGQYWRLCDAQGKPPGVMGWWPSRA--VTFLDN 298


>At2g15530.2 68415.m01778 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 113 SLDAAGRRTGPTRPQPHVGAVALHAGT 33
           +L  AGRR  P +PQ  V     H GT
Sbjct: 289 TLSRAGRRLNPRQPQESVAFSVSHGGT 315


>At2g15530.1 68415.m01777 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 704

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 113 SLDAAGRRTGPTRPQPHVGAVALHAGT 33
           +L  AGRR  P +PQ  V     H GT
Sbjct: 289 TLSRAGRRLNPRQPQESVAFSVSHGGT 315


>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
           protein contains proline-rich domains,
           INTERPRO:IPR000694
          Length = 310

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 89  TGPTRPQPHVGAVALHAGTLAQSR 18
           T P+ P PH   VAL A T A +R
Sbjct: 35  TNPSSPPPHTTVVALAASTSAVAR 58


>At1g20060.1 68414.m02511 kinesin motor protein-related
          Length = 951

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -3

Query: 135 PVQRPSDVAGRRRPSHRAHATPAT 64
           P   PS V  RR P  RA ATP T
Sbjct: 10  PPPCPSTVTVRRNPPRRARATPFT 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,106,171
Number of Sequences: 28952
Number of extensions: 184164
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)