Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d15
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    37   0.004
AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical ...    36   0.007
Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical p...    26   5.5  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 240
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD+    +E+    KG
Sbjct: 8   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKG 67

Query: 241 LFQSC 255
              +C
Sbjct: 68  YMHTC 72


>AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical
           protein Y111B2A.2 protein.
          Length = 86

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 67  RGLLNAVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKG 240
           R +L +  KR I V+LA++ V+   F       R  KY EF+  YD     +E+    KG
Sbjct: 4   RNMLQSYGKRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKG 63

Query: 241 LFQSC 255
              +C
Sbjct: 64  YMHTC 68


>Z81117-12|CAB03320.2|  345|Caenorhabditis elegans Hypothetical
           protein T06E6.5 protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 252 GLE*TLLAHLLKFLFSIIGSVEFSIL-SLALITNELLEGKTSDARESQSNNN 100
           G++ TL+A+   FL    G +E  +  S++LI+ +LLEG        + NNN
Sbjct: 84  GMKQTLVANR-DFLILAAGHLENLLRNSISLISIDLLEGADFSENSDRDNNN 134


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 145 KQLIGNERKRKYAEFYRTYDAEKEFEE 225
           ++L+  E++RKY E      A +E+EE
Sbjct: 677 ERLLEEEKRRKYLELQNEIKAAREYEE 703


>Z74032-4|CAA98463.2|  404|Caenorhabditis elegans Hypothetical
           protein F35B12.5 protein.
          Length = 404

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 121 SGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 240
           +G+A    +Q     R  +  + YRTY+ ++    + +KG
Sbjct: 297 NGLASIDSRQWTNERRDNRAPDSYRTYEPDQPCHSLYQKG 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,282,719
Number of Sequences: 27780
Number of extensions: 101014
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)