Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10d15
(330 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi... 30 0.43
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 29 0.75
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi... 28 1.7
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po... 28 1.7
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi... 27 2.3
At3g26580.1 68416.m03318 expressed protein 27 3.0
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 3.0
At4g20290.1 68417.m02963 expressed protein 27 4.0
At4g35880.1 68417.m05095 aspartyl protease family protein contai... 26 5.3
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi... 26 5.3
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 26 7.0
At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol 3-phosphat... 26 7.0
At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family... 26 7.0
At2g14570.1 68415.m01632 SWIM zinc finger family protein 26 7.0
>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 763
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +1
Query: 70 GLLNAV-IKRNIIVALALSGVA---GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 228
GL+NAV I L + G+ GF + +GN YA+F DA+K FE++
Sbjct: 377 GLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDI 433
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 133 GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGL 243
GF F +GN Y +T DA K F+EM ++ +
Sbjct: 143 GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179
>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 850
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 109 ALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 228
A ALS V GF +GN Y+ DA K F+EM
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188
>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
potassium channel protein identical to SKOR [Arabidopsis
thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
6 transmembrane (1P/6TM) Shaker K+ channel family,
PMID:11500563
Length = 828
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 162 ITNELLEGKTSDARESQSNNNVTFDDGVEE 73
I N LLEGK S+ R Q +++TF +E
Sbjct: 516 ILNNLLEGKESNVRIKQLESDITFHISKQE 545
>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 792
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 127 VAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKK 237
V G + L+G+ + Y +F+R DA K F+ M +K
Sbjct: 147 VDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183
>At3g26580.1 68416.m03318 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 154 IGNERKRKYAEFYRTYDAEKEFEEMRKK 237
+ ERKR+ EF+ T + E++ EE++ K
Sbjct: 113 VEKERKRRAKEFHDTKELERKAEELQYK 140
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 130 AGFTFKQLIGNERKRKYAEFYRTYDAEKE 216
A F L+ KR + EF+ TYDA E
Sbjct: 149 ANFVHLSLLSKYYKRGFREFFLTYDANAE 177
>At4g20290.1 68417.m02963 expressed protein
Length = 118
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 145 KQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 240
K+ G E+KR+ + D E+E EE R+KG
Sbjct: 13 KERGGEEKKRRRSALNSEEDEEEEEEEGRRKG 44
>At4g35880.1 68417.m05095 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 524
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 186 FSILSLALITNELLEGKTSDARESQSNNNVTFDDGVEETSHLRLARCRYCT 34
F + ++ + L+ G+ ES+S +++TF DG + L Y T
Sbjct: 60 FEYFNALVLRDWLIRGRRLSESESESESSLTFSDGNSTSRISSLGFLHYTT 110
>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 613
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 130 AGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 255
AG ++ N YA+F R Y K F+EM + C
Sbjct: 76 AGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYC 117
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 195 SVEFSILSLALITNELLEGKTSDARESQSNNNVTFDDGVEET--SHLRLA 52
+VEF + S +I ELL GK +S + + EE S LRLA
Sbjct: 573 NVEFDVYSFGVILFELLTGKQGSDENVKSVRRLVKERRGEEALDSRLRLA 622
>At4g38570.1 68417.m05460 CDP-diacylglycerol--inositol
3-phosphatidyltransferase, putative /
phosphatidylinositol synthase, putative similar to
phosphatidylinositol synthase (PIS1) - Arabidopsis
thaliana, PID:e1313354 [gi:3367632]
Length = 225
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Frame = +1
Query: 61 QMRGLLNAVIKRNIIVA-----LALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEE 225
Q L+N V+K + ++ LALS + G++ KQ+I + + A+ YD EK+ ++
Sbjct: 166 QTENLMNVVVKSLMQISPLSLLLALS-IFGWSIKQIINVIQMKTAADVCVLYDIEKQHKK 224
>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to vegetative cell wall
protein gp1 [Chlamydomonas reinhardtii]
gi|12018147|gb|AAG45420
Length = 175
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 103 IVALALSGVAGFTFKQLIGNERKRKY 180
I A+ + GVAGF +K+ N R+ +Y
Sbjct: 142 IAAVCVVGVAGFVYKKRQENIRRSRY 167
>At2g14570.1 68415.m01632 SWIM zinc finger family protein
Length = 435
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 173 ESMLNSTEPMMLKRNLRRCARRVYSNPAK 259
+ +LN+ E + K R CAR +Y N K
Sbjct: 275 KGLLNAIERKLPKVEYRMCARHIYGNLKK 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,826,589
Number of Sequences: 28952
Number of extensions: 93191
Number of successful extensions: 372
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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