Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d14
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   3.7  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    20   8.5  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 236 VSPRPGLGDPHAPIPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRC 93
           +SP P + +P   I    P + PG T  +  + + P++     P+I C
Sbjct: 278 LSPPPHVYNPPDHIQQATPYSAPGPTYSTWSTVQTPTTVMS--PTINC 323


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 229 GETTEKDIHGMVQQSPQKSWHRHRE 303
           GE  +KDI   +Q    K   +H+E
Sbjct: 56  GEELKKDIPDALQNECAKCNEKHKE 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,741
Number of Sequences: 336
Number of extensions: 1676
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)