Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10d14
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    42   5e-05
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    30   0.17 
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    29   0.22 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    28   0.68 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   2.7  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   3.6  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   4.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    24   8.4  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    24   8.4  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 227 WEKQQKKTFTAWCNSHLRKAG-TGIENIEDDFRNGLKLMLLLEVISGETLPKPDRG-KMR 400
           W+  Q +TFT W N+ L       + ++  D  +G+ L+ LLE+I  E L + +R  +MR
Sbjct: 6   WQSVQNRTFTKWFNTKLSSRDLPSVFDLRKDLSDGILLIQLLEIIGDENLGRYNRNPRMR 65

Query: 401 FXKIAN 418
             ++ N
Sbjct: 66  VHRLEN 71


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 253 HGMVQQSPQKSW-----HRHREHRGRLPQWLKAHAAAGGHLRRDSAQARPW 390
           H  +++ P+ +W     H+HRE RG      K+     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRYNNSPQHATW 189


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 29.5 bits (63), Expect = 0.22
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = +1

Query: 253 HGMVQQSPQKSW-----HRHREHRGRLPQWLKAHAAAGGHLRRDSAQARPW 390
           H  +++ P+ +W     H+HRE RG      K+     GH   +S Q   W
Sbjct: 139 HKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRFNNSPQHATW 189


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 206 HAPIPPL-VPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSR 63
           HAPIPPL VP     +  HS    +     SP+ P +  S + + +++R
Sbjct: 265 HAPIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTLGSSTR 313


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 233  SPRPGLGDP---HAPIPPLVPCNRPGTTRHSCLSPRCPSSWSPH*PSIRCSFEPMTANSR 63
            SP+P + D    HAP PP+ P N      H+ ++ R PS+     P  R SF  +++ S 
Sbjct: 1364 SPKPQIPDSSNVHAPPPPVQPMN--AMPSHNAVNAR-PSA-----PERRDSFGSVSSGSN 1415

Query: 62   V 60
            V
Sbjct: 1416 V 1416


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 88  NEHRIDGQCGDHDDGQRGDKQL 153
           +E  I+    DHDDG+  D +L
Sbjct: 204 SESEIESSDSDHDDGENSDSKL 225


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 286 SFSEVTVAPCRECLFLLFLPGRV 218
           ++  +TVAP    LFLL +P +V
Sbjct: 301 NWDNITVAPSTNVLFLLSVPSKV 323


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +1

Query: 223 GLGETTEKDIHGMVQQSPQKSWHRHREHRGR 315
           G+  T  + +H M +Q     W ++ +  GR
Sbjct: 377 GITYTGSRTLHSMAEQGHAPKWFKYVDREGR 407


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 217 RPGLGETTE-KDIHGMVQQSPQKSW 288
           R G G  T  KDI G++ + PQ+ W
Sbjct: 390 REGGGNNTYGKDIPGLLSKMPQEEW 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,014
Number of Sequences: 5004
Number of extensions: 26813
Number of successful extensions: 79
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)